Benincasa hispida (wax gourd): 120070828
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Entry
120070828 CDS
T07258
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
120070828
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120070828
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
bhj02000
]
120070828
Transporters [BR:
bhj02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
120070828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Motif
Other DBs
NCBI-GeneID:
120070828
NCBI-ProteinID:
XP_038878641
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Position
2:complement(55697965..55761409)
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AA seq
1301 aa
AA seq
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MFLTRGGGMASRLRFSISILLLQMIFLASMLIGGEADLSVHARSGFTSGERHAAEYCAMY
DICGARSDGKVLNCPYGSPSVKPDELFSAKIQSLCPTISGNVCCTEAQFETLRSQVQQAI
PLFVGCPACLRNFLNLFCELSCSSRQSLFINVTSIAEVGGSMTVDGIDYYVTEKFGKGLY
DSCKDVKFGTMNTRALDFVGGGAKSFEEFFAFLGQKVAPGFPGSPYAINFKVNPSKSSQM
ELMNVSVYSCGDTSLGCSCGDCPSSPVCSGLEPPPPKSNACTINIWSLKISCIDFSITIL
YVIFISSFLGWALFHPTRESRRSSARGEPLLNIGDDGEIQSVNLEENENGATKEHGVHLT
LRNGVQLSTIQGYISNFYREYGAWVARNPILVLCTSLSIVLILCMGLVCFKVETRPEKLW
VGHGSKAAAEKQFFDSHLAPFYRIEQLIIATKPGGRHGRAPRIVTEDNILLLFDIQNKVN
ELVANYSGSVVSLNDICLKPLGEDCATQSILQYFKMNPENFDDYGGVEHAEYCFQHYTST
ETCFSAFKAPLDPSTSLGGFVGNNYSEASAFVVTYPVNNAMDSVGNENGKAIAWEKAFVK
LAKEELLPLVQSRNLTLSFSSESSIEEELKRESTADILTIAVSYLVMFAYISVALGDSNI
SSSFYLSSKVLLGLSGVILVLLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCI
LVHAVKRQPYELTLEERISSALVEVGPSITLASLSEILAFAVGAFVPMPACRVFSMFAAL
AVLLDFILQLSAFVALIVFDILRAEDHRVDCFPCIKVPPHSDEPNQGFNQGRPGLLSRYM
KDVHAPLLGLWGVKIVVVVIFVGLTLGSIALSTKIEVGLEQKIVLPRDSYLQDYFDELAE
YLRIGPPVYFVVKDYNYSSKSRHTNQLCSISQCDSNSLLNEISRASLTPELSYIAKPAAS
WLDDFLVWLSPEAFGCCRKFTNGSYCPPDDQPPCCFPDEGSCDSSEGVCKDCTTCFHHSD
LIGDRPTTVQFQEKLPWFLNSLPSADCAKGGHGAYTNSVNLKGYESGIIKASEFRSYHTP
LNKQGDYVNALRAAKEFSAKISDSLKMDIFPYSVFYIFFEQYLDIWETALMNIAIALGAI
FIVSLVITSSLWSSAIIILVLAMIIIDLMGVMAILKIQLNAVSVVNILMSIGIAVEFCVH
LVHAFLVSCGDRSQRAQQALSTMGASVFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLA
LVIIGFLHGLVFLPVILSMIGPPSRYLVKDDDPMETELLVS
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtttctcactcgaggaggagggatggcctctcgtttgcgtttctcaatttccatttta
ctgttacagatgatcttccttgcatctatgctgataggaggggaggctgatttatctgtc
catgcgcgttccggttttacttccggggagagacatgcagcagagtactgtgctatgtat
gatatatgtggagcacgcagtgatgggaaggttctgaactgcccttatggttcgccatcc
gtgaagcctgatgagctgttctcagcaaaaattcaaagcttgtgtcctacaataagtgga
aatgtttgttgtactgaggctcaatttgagacattacggtcacaggttcaacaagctatt
ccactttttgtgggctgtccagcatgcttgaggaatttcctaaatcttttttgtgagctt
tcctgctcttcaaggcagagtttatttattaatgtgacgtccattgctgaggttggtgga
agtatgactgtggacggcattgactactatgtaactgagaagtttggaaaaggtctttac
gattcctgcaaggatgttaaatttggtacaatgaatacgcgggccttagattttgtcggt
ggtggtgctaaaagttttgaagaattttttgcatttcttggtcagaaagtagcccctggt
tttcctggatcaccttatgccataaattttaaagtgaacccttcaaagtcatctcaaatg
gagcttatgaacgtgtctgtttattcatgtggtgacacttcactgggctgctcctgtggt
gattgcccttcgtctcctgtgtgctctggcttagaacctcctccaccaaaaagcaatgcc
tgcaccatcaatatttggtctcttaagatcagctgcattgacttctcaatcacaatactt
tatgttatatttatttcctcattccttggatgggctttgtttcatcctacaagagagagt
aggaggtcttcagctaggggagaacccttattaaacattggagacgatggtgagatccag
tctgttaacttggaagagaatgagaatggtgcaacaaaggagcatggggtgcatcttaca
ttgaggaatggtgttcaactttccactattcaaggatacatttctaacttttatagggaa
tacggagcttgggttgctcggaaccctatcctagtgctgtgtacctctttatcaattgtt
cttattctctgcatgggtctggtttgttttaaagttgaaacccggccagagaagttatgg
gtaggtcatgggagtaaagcggcagcagagaagcaattttttgacagccatcttgcacct
ttctacagaattgaacagttgataatagcaaccaagcccggaggaaggcatggcagggca
ccacgtatagttacggaggataatattctattactctttgatatacagaataaggtcaat
gaacttgttgcaaactattctggctcagttgtatccctaaatgatatatgcttgaagcca
ctcggtgaggattgtgccacacaaagtattctacagtactttaaaatgaaccctgaaaat
tttgatgactatggaggagtggaacatgctgagtattgcttccagcattatacctccaca
gagacatgtttcagtgctttcaaggctccgcttgatcccagcacatccttgggtggattt
gttgggaacaattattctgaggcctctgcatttgttgttacatatcctgtcaataatgca
atggattctgttggcaatgagaatgggaaagcaatagcgtgggaaaaagcttttgtcaaa
ttagctaaggaggaactgctgccactagtgcagtccaggaatcttactctttctttttca
tctgagagctcaattgaggaggaactgaaaagagaaagcactgcagatatcctgacaatt
gctgtaagctatctcgttatgtttgcctatatatcagtggctttgggagattcaaatatt
tcgtcttctttctacctctcatccaaggtgttgcttggcctctcaggagttatacttgtt
ctgctgtctgttctaggatctgttggattcttcagtgccattggagtaaaatcaacatta
ataattatggaggttattccattcctggtcttagcggtaggagttgataacatgtgtata
ttagtacatgctgtgaaacgacaaccatatgagttgactttagaagagcgcataagcagt
gcgctggttgaagttggtccttccataacgttagctagtttgtcagagatcttggctttt
gctgttggagctttcgttcccatgccagcatgtcgtgttttttccatgtttgctgctttg
gcagtgttgctcgacttcattcttcaactgtcagcatttgtagctcttattgtgtttgat
attttgagagctgaggatcacagagtcgactgttttccatgcataaaagttcctccacat
tctgatgaacctaaccaaggcttcaatcaggggagacctgggcttctttctcggtacatg
aaggacgttcatgcaccccttcttggactttggggagttaagattgttgttgttgtcatc
tttgttggcttaactttaggaagcattgcattatctacaaagattgaggttggattggaa
caaaagattgtcctcccacgagattcttaccttcaggattattttgatgagcttgcggaa
tatctaaggattgggccaccagtatattttgttgtgaaggattacaattatagctcaaaa
tctagacatacaaaccagctgtgctccatcagccagtgtgattcaaactccctgttgaat
gagatatcaagagcgtcattgacaccagagttgagctacattgctaaacctgcagcatca
tggctcgatgattttcttgtatggttgtcgccagaggcatttggttgctgccggaaattt
acaaatggttcctattgtccaccagatgaccagcctccttgctgttttccggatgaaggt
tcctgtgactcaagtgaaggagtgtgcaaagattgtacaacttgctttcaccactcagat
ttgattggtgaccgtccaactacagtgcaattccaggagaagcttccgtggttcctcaat
tctctaccatctgctgactgtgcaaagggtggtcatggagcttataccaatagtgtgaat
ttgaagggttatgaaagtggtatcataaaagcttctgagtttcggagctatcacacacca
cttaacaagcaaggtgactatgtaaatgcattgcgagctgcaaaggagtttagcgcaaag
atttctgattctttgaagatggatatcttcccatactctgtcttctatattttctttgag
caataccttgatatatgggagacagctttgatgaacattgccatagcacttggtgccata
tttattgtctctctagtcatcacatctagtttgtggagttcggcaattattatacttgtt
ttggctatgattattatagatctcatgggagtaatggcaattctgaaaattcaactaaat
gcagtctctgtcgttaacatattaatgtcaataggaattgctgttgagttttgcgtacat
ttagttcatgcatttttggttagctgtggtgacagaagccagcgagcacagcaggctttg
agtacaatgggagcctctgtattcagtgggataactctcactaagctggttggggtcatc
gttctttgcttcgcgaagtcggagatatttgtggtttattacttccaaatgtaccttgca
ttggtgatcatcggtttcctccatggcctcgtgtttctacctgtaatattgagtatgatt
ggaccaccatcaagatatttggttaaagatgatgatcctatggaaactgagcttcttgtt
tcataa
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