Benincasa hispida (wax gourd): 120070892
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Entry
120070892 CDS
T07258
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03030
DNA replication
bhj03420
Nucleotide excision repair
bhj03430
Mismatch repair
bhj03440
Homologous recombination
bhj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120070892
03420 Nucleotide excision repair
120070892
03430 Mismatch repair
120070892
03440 Homologous recombination
120070892
03460 Fanconi anemia pathway
120070892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bhj03000
]
120070892
03032 DNA replication proteins [BR:
bhj03032
]
120070892
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120070892
Transcription factors [BR:
bhj03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120070892
DNA replication proteins [BR:
bhj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120070892
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120070892
MMR (mismatch excision repair)
120070892
DSBR (double strand breaks repair)
HR (homologous recombination)
120070892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
PIH1_CS
Motif
Other DBs
NCBI-GeneID:
120070892
NCBI-ProteinID:
XP_038878718
LinkDB
All DBs
Position
2:complement(1778198..1781690)
Genome browser
AA seq
623 aa
AA seq
DB search
MADAPTVGGISNILSNPSPDSPSDVPDVVVQVIDLKATGNRYMFTASDGDMKLKAILPSN
LTSDVISGNIQNLGLIRVLDYSLNDIPNKQEKYLIVTKCEVVSPALEKEVKTEVKKEETG
IILKPKLEDDDKSTFNNGSGILLKPKQELVAKSAAQIVHEQQTNMAPAARMSMTRRVHPL
VYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGYVFNVVLTDEDGTQIQATMFNDAARKFY
EKFSLGKVYYISRGALKVANKKFKTVQNDYEMTLNVNSQVDEVSSEAAFVPETKYNFVKI
DMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDL
ATTVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSIMINPDIKEAHDLRSWYDSE
GKAVSMSSVSSGLSPSTKSGTRSMYSDRISLSHILQNKSLGEEKPMFFSIRAYVSFIKPD
QTMWYRACKTCKKKVTEAIGSGYWCDNCQKNDEECSLKYIMVVRVSDASGEAWFSTFNEE
AERIIGCSADELDQLKSQVGEENSYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITVRS
VAPVDFAAESRFLLEEIAKMKAS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcaccaaccgttggcggcatatcaaacattttgtctaatccatccccagac
tccccctccgatgtccccgatgtcgtggttcaggtcatcgatctcaaggcgacgggaaat
cgctacatgtttactgctagcgatggggatatgaagcttaaagctattcttccatcaaac
ctgacgtctgatgtcatttctggaaacattcaaaatttggggcttattcgcgttcttgac
tactctctcaatgacattccgaacaagcaagaaaagtatttaatcgtgacgaaatgtgag
gttgtttctcctgctctagaaaaggaggtaaaaactgaggttaagaaagaggaaacaggt
attattttgaaaccgaagctagaggatgatgataagagcacatttaacaatggatctggt
attcttttaaagccaaagcaagaattggttgccaaatcagctgctcagattgtacacgag
cagcaaacgaatatggcaccagctgcacgtatgtccatgacaaggcgagttcatcccctt
gtctacttaaatccttatcagggagattggaccatcaaagtccgtgttacggataaggga
aacctgcgtacatacaagaatgctcaaggagaaggttatgtttttaacgtagtgttgaca
gatgaagatggtacacaaatacaggcaacgatgttcaatgatgctgcaaggaagttctat
gagaaattttcccttggcaaagtttactacatttccaggggggctttgaaagttgctaat
aagaaatttaagacagttcaaaatgattatgaaatgactttgaatgtgaattctcaagta
gatgaggttagcagtgaagctgcgtttgttcctgaaacaaaatataattttgtcaagatt
gatatgttaggtccgcacgtgaatggaagggaccttgttgatgttattggagttgttcaa
agtgtttctcctacaatgagcattcgaaggaaaatcaacaatgagacagctccaaaacgt
gatgtaaccattgctgatgagacgaagaagacagttgtgatatctttgtggaatgatctt
gcgaccactgtggggcaggagttgcttgacattgccgaccaatctccaataattgcagtg
aagtatcttagagttggggactttcaaggtgtatctttgtccacaataagcagaagctca
attatgataaatccagacataaaggaagcacatgatttgagatcctggtatgactctgaa
ggaaaagccgtatccatgtcttctgtaagctctggcctgagcccatcaaccaagagtggt
accaggtccatgtactctgaccgtatctccctatctcatatactccaaaacaaatctttg
ggagaagaaaagcccatgttcttcagcatcagagcatatgttagctttatcaagcctgat
caaacaatgtggtatcgggcttgcaagacatgcaaaaagaaggtgactgaagcgattgga
tctggatattggtgcgacaattgtcagaaaaatgatgaagaatgcagtttaaagtacata
atggtcgtgagagtttctgatgcaagtggtgaagcttggttctctacattcaatgaagaa
gcagagagaatcattggatgctctgccgatgagcttgaccaactcaaatcacaggttgga
gaggagaattcatatcaactgaaactcaaacaagccacttgggttccccatttatttcga
gttagcgtttctcagaatgagtacaacaatgagaagagacaaaggatcactgtcaggtct
gttgctccagttgactttgccgctgaatccagatttttgctagaagagatagcaaaaatg
aaagcttcctaa
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