Benincasa hispida (wax gourd): 120071144
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Entry
120071144 CDS
T07258
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120071144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120071144
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120071144
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
120071144
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
120071144
NCBI-ProteinID:
XP_038879159
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All DBs
Position
2:31097910..31120003
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AA seq
197 aa
AA seq
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MKEGEEETTEFVTPGEVLGIFSDFRPGRGAYVFNNTVYASLSGFRRTIPPPTDSSDLRST
VEVTGHKAHGAVPAPGSIVIARVTKVMSKMASADIMCVGPKSVKEKFTGIIRQQDVRAME
IDKVDMHLSFRPGDVVKALVLSLGDARAYHLSTAKNELGVVSAESTAGAVMVPISWTEMQ
CPLTGQIQQRKVAKVGG
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaggcgaggaagagactactgagttcgtcactccaggtgaagttctcggaatc
ttttccgacttcagacctggaagaggcgcttatgtcttcaacaacactgtttatgcttct
ctttctggtttccgccgcactattcctcctcccaccgactcttcggatctaagatcaact
gtggaagtgactggtcataaggcccatggtgctgttccagctcctggatctattgtcata
gctcgagtcacaaaagtaatgtctaaaatggcatcagctgatatcatgtgtgttggtcca
aagtctgtgaaagagaagtttactggaattataaggcaacaagatgttcgagcaatggag
atcgataaagtagatatgcatttgtcatttcgtcctggtgacgttgtgaaagctcttgtt
ctttctcttggagatgcaagggcctatcatctatcaactgcaaaaaatgaactcggcgtg
gtctctgcagagagcacagcaggtgcagtgatggttcccataagttggacagaaatgcag
tgtccattaacaggccaaattcagcaaagaaaagtagccaaagttggaggatga
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