Benincasa hispida (wax gourd): 120071172
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Entry
120071172 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120071172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120071172
03012 Translation factors [BR:
bhj03012
]
120071172
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120071172
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120071172
Translation factors [BR:
bhj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120071172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_16
ATPase
T2SSE
AAA_30
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
120071172
NCBI-ProteinID:
XP_038879207
LinkDB
All DBs
Position
2:2047601..2056433
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AA seq
1213 aa
AA seq
DB search
MPYSTIFFHSYIRTSMSISFRPTSSPFSISSTRFRPWIPHLFTRRNLSMGFVNFQSRPGL
VSGVRCTNQSKWVEVALREKQQDHVKGFRQRNVAFPFWQHQPCSNYGRFAYEDVSSDDSD
VEFGSPQGQRSSSTLDNVDEWRWKLTMLLRNNDELEVVSREKKDRRDFEQLSALATRMGL
HSRQYAKVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQREVEGHLRLYQSSHKSVSRGC
FSNSYLPKDGVAENYANNNGPFEHQEPLTTQSVVMEKILRRKSLQLRNQQQDWQESPEGQ
KVIEFRKSLPAFKEREALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCS
IICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRETRLLFCTTGVLLRRLLV
DRNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGA
PTMHIPGFTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKAWKMQKQAPALKKRKTQIA
SSVEDAFEAANFSAYSPRTRESLSCWNPDSIGFNLIEHVLSYIVKRERPGAILVFMTGWD
DINSLKDQLQSHPLLGDPSRVLLLACHGSMASSEQKLIFDKPEDGVRKIVLATNMAETSI
TINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRC
VYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISDFLSNALQPPEPLSVQNAIDYLKTIG
ALDKKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSDKK
DLAESAKAQFAARDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLRKQ
FFFLLKDTGLVDYDAEKCNISNHDEHLIRAVICAGLFPGICSVVNKEKSLALKTMEDGQV
MLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGNVSRGGLDGHLK
MLDGYLEFFMKPALAETYLSLKGELDKLVHQKLLNPKLDMEPHNELLSAIRLLVSEDRCE
GRFVFGRHMPVPSKKAMTDGQPRQKNGDGAGGDNSKNQLQTLLLRAGHETPTYKTKQLKN
NQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETHSSSQAIDHASILLKKSRK
KNDKTSFRSAKWS
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcaaccatcttcttccattcctatatcaggacttccatgtccatttccttc
agaccaacttcttctccattttccatatcttcaacccgcttcagaccttggattcctcat
cttttcacccggaggaacctatccatggggtttgtcaacttccagtctcgtccggggttg
gtgtctggtgttcgttgtacgaaccaatccaagtgggttgaagttgccttgagggagaaa
cagcaggaccatgtcaagggtttccggcagagaaatgtcgccttcccgttttggcagcat
cagccttgctccaattatggtcgctttgcgtatgaggatgtttctagtgatgattctgat
gtcgaatttgggtctccgcaggggcaaaggagttcatcaaccctcgataacgtagatgag
tggagatggaagttaaccatgcttctacgcaacaatgatgaactagaagtagtgtcaagg
gagaaaaaggatagacgtgattttgagcaactttcagccttggcaaccagaatgggtttg
catagccgtcaatatgcaaaagttgttgtatttagtaaagatcctctgccgaattacaga
ccggacctggatgataagcgaccacagagagaagtggtcttaccttttggggtccaaagg
gaagttgaaggtcatctaagattgtaccaatcttctcacaagtctgtgtcaagaggatgt
ttttcaaatagttacttaccaaaagatggcgttgctgaaaactatgctaacaataatgga
ccatttgagcaccaggaacctttgacaacacaaagtgttgtcatggagaaaattcttcgc
cgcaaaagtttgcaactgaggaatcagcagcaggattggcaggaatctcctgagggccaa
aaagtgatagaatttcgcaaaagtctccctgcattcaaagagagggaagcattgttaaag
gccatttcagaaaatcaggtagttgttgtctcaggtgaaactggttgtggcaaaaccaca
cagcttcctcagtatattttagaatctgagattgaagctgcgcgtggagcttcttgtagt
attatctgtactcagcctagacgtatttctgccatggctgtttctgaaagagttgctgca
gaacgtggagagaaactgggagagtctgttggttataaagttcggctggagggtataaaa
ggaagggaaactcgtcttctcttttgcactactggtgtactattgagaagattgctcgtt
gacagaaatttgaaaggtgtaactcatgttattgttgatgagattcatgaacgtggaatg
aatgaagattttcttgttattgtcctgaaagatctccttcctcgacggcctgatttgagg
ttgatcttgatgagcgcaactctgaatgcagaacttttttcttcttattttggtggtgct
ccaacaatgcatatccctggttttacatacccagttcgtgcacactttttggagaatatt
cttgagattactggctatcgattgactccatacaatcaaattgatgattatggtcaagaa
aaggcatggaaaatgcaaaaacaagctccagctctaaagaaaaggaagacccagattgct
tcatctgttgaggatgcatttgaggctgctaacttttcagcatacagtcctcggactcgg
gagtctctatcctgttggaatcctgactcaattggtttcaacctcattgagcatgtcctc
tcttacattgtcaagagggagaggccaggtgctatattagtttttatgaccggttgggat
gatataaactctttaaaggaccagctccagtctcatcctttattaggggatcctagcaga
gtcttgctccttgcatgtcatggttcgatggccagctctgagcagaaattgatatttgat
aaacctgaagatggagttaggaaaatagtcctagctacgaacatggcagagactagtatc
accatcaatgacgtggtttttgttgttgactgcggaaaagcaaaggagacatcctatgat
gcactaaataacactccttgtttgcttccatcctggatctccaaggctgctgcacgacaa
agaagaggtagggctggtcgtgttcaacctggcgagtgttaccatctctatcccagatgt
gtatatgacgcttttgctgattatcaactgccagaacttttaaggaccccattgcagtct
ttgtgtttgcaaatcaagagtctgcaacttggaagtatatcagacttcctatcaaatgca
ttgcagccgccagagcctttatcggttcaaaatgccatagactatttgaagacaattgga
gctctggataagaaagaaaatctgacagttctcgggcaacacttgtcagttcttccagtt
gagcctaaactaggaaaaatgcttatattaggagctattttcaactgtcttgatccaatt
atgactattgttgctggtcttagtgtcagagatccttttcttatgccatctgataaaaag
gatttagccgaatcagcaaaagcacagtttgctgcacgtgactgtagtgatcatcttgcc
ttagttcgagcttatcagggttggagagatgctgaaaaacagcaatctggttatgagtac
tgttggagaaactttctctccatgcaaactcttagagccattgactctttgagaaagcag
ttcttctttttgctgaaggacactggtctagttgattatgatgcagaaaaatgcaatatc
tcaaaccacgatgagcacttaattcgtgcagtcatctgtgctggtttgtttcccggaatt
tgctctgttgtgaacaaagagaaatcattagctttaaaaacaatggaagatggtcaggtt
atgctatactcgaactcagttaatgctggctatccaaaaattccctacccttggctggtg
tttaatgaaaaggtgaaagtcaattcagtctttcttcgggactctactggggtttctgac
tctatcctgcttttatttggaggaaatgtttcgagaggaggacttgatggtcacctcaaa
atgttggatggttatttggagtttttcatgaaacctgcattggccgagacttatttgagc
cttaaaggcgagcttgataagcttgttcatcaaaaacttttgaatccgaagttagatatg
gagccacacaatgaactactatcagcaataaggttgttggtgtcagaggatcgctgtgag
ggtaggtttgtctttggtcgccatatgcctgtaccatcaaaaaaagcgatgaccgacggt
caacctcgacagaaaaatggtgatggagctgggggtgataattccaagaatcagcttcag
accctacttctgagagcgggacatgaaacaccaacttacaaaactaagcaattaaaaaac
aaccagtttcgttccactgttattttcaacgggttgaactttgtgggccaaccctgtggg
agcaagaaacttgcagaaaaagatgcagctgctgaggctctgctatggctacagggtgag
acacattcatcttcccaagccatcgatcatgcttccatacttctgaaaaagagcagaaag
aagaatgataaaacatcatttcgtagtgccaaatggagttga
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