Benincasa hispida (wax gourd): 120072569
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Entry
120072569 CDS
T07258
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120072569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120072569
03036 Chromosome and associated proteins [BR:
bhj03036
]
120072569
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120072569
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
120072569
COMPASS/SET1 complex (yeast)
120072569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_VPS8
KNTC1_N
Beta-prop_WDR35_TULP_N
VPS11_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
120072569
NCBI-ProteinID:
XP_038880888
LinkDB
All DBs
Position
3:16201376..16205162
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AA seq
332 aa
AA seq
DB search
MGGASSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRL
YDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGH
HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFSIAF
GGYIRMFDARKYEKGPFDIFSVGEDISDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL
LSTYNVKPISSNLTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIK
WAPGSLMFATGSSELSFWIPDLSKLGAYVDRK
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgggaggggcttcatccgaaagggaggagaaagtgtcattggagctaactgaagaaatc
cttcaaagcatggaagtcggcatgacattcagagactataatggtagaatcagttcaatg
gattttcataggacttcaagctatctggtgactgccagtgatgatgaatccatccgactt
tatgatgttgccagtgcaacatgtttgaaaacaattaacagcaaaaagtacggggttgat
ctggtttgctttacttctcatcctacaacagtgatatattcttcaaaaaatggatgggat
gagtctctgcgacttctctccttgaacgacaataagtacctgcggtactttagaggtcat
catgacagagttgtatcactcagcttatgtgctcgcaaagaatgctttatatccggctct
cttgatcgaactgtgttgctttgggatcaaagggcagagaagtgccagggtcttttacgt
gtacaaggaaagccagctacagcatacgatgagcaaggtgtggtcttttccattgccttt
gggggttacatacggatgtttgatgctcgcaaatatgagaagggtcctttcgatatattt
tctgttggggaagatatatctgacgcaaatattgtaaagttcagtaatgatgggagactc
atgttgttgacaacttcggatgggcatattcatgttcttgattctttcagaggaacacta
ttatctacatacaatgtaaaacccatttctagcaatttgacgttggaggcatcttttagt
ccagagggaatgtttgtgatatcaggttcaggagatggcagtgtttatgcttggagtgta
aggagtggaaaagaggttgcaagctggatgagcactgaaatggagcctcctgtcataaaa
tgggctccgggaagtctaatgtttgcgactggatcttctgaactgtcattttggatacct
gatttgtctaaattgggagcttatgtagacagaaaatag
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integrated database retrieval system
