Benincasa hispida (wax gourd): 120072726
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Entry
120072726 CDS
T07258
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120072726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120072726
04121 Ubiquitin system [BR:
bhj04121
]
120072726
03036 Chromosome and associated proteins [BR:
bhj03036
]
120072726
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120072726
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120072726
Ubiquitin system [BR:
bhj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120072726
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120072726
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120072726
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-HC5HC2H
BRCT
zf-C3HC4_2
zf-RING_2
BRCT_2
zf-C3HC4
zf-RING_6
zf-RING_UBOX
zf-C3HC4_3
zf-HC5HC2H_2
zf-C3HC4_4
zf-RING_5
zf-RING_10
PHD_NSD
DUF7908
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
120072726
NCBI-ProteinID:
XP_038881125
LinkDB
All DBs
Position
3:3308255..3315270
Genome browser
AA seq
1110 aa
AA seq
DB search
MGDPSHLEKMGRELKCPICLSLLNSAASLGCNHVFCNVCIEKSMKSGSNCPVCKVPYRRR
EVRPAPHMDNLVSIYKSMEAASGMNIFVTQNLSCAKLSDRDKQVEGDGNGSKRLNAETSE
STAYIQRTLKKESQTIQKSKRKISASSPLKPSFPRKKRVQVPQRPLSETPTRPAKLASSC
NEVNEEPRKSTVASEDKGQPVLSPFFWLREREEEDEKSNQQSDLDQPTDSWAMNVLAFSD
IKDSLDESPSKPQMEEVCGNPSNDLDLFDSEMFEWTQRACSPELCSSPFKLQDEDISGTE
TDLLAAVPNEELGKQNPNGNNNQRGGIWDELVPDVLPPEGNSMKDHSRCAKLTKRGRKKK
GIALKKCSKRLAESATGNCSNPATGTECFSQKQENDVINSFGSLKIGTKRSKKKIHFGTA
ANRTTLESVPAVPINLPTPNENFKTETRTFPEGEKVNQIQEKRRNNDRASKTMHFGIDAN
KATPDNTLTDLVSLGAPDGGQKNFGTETLALPEGEKACQLPENSCTKTRGRKKAHFGNNA
NKRILEDIPAHPISLGTPNNGPENFGTELLAFQEVEKVSQFPEKNRKNGGVRREQGMVQC
CRKSKKQKLDSVDDDLQENPSFNQNQHDDCATPGLTTTPSVIATSTDQKREHKKQEKNSS
VCAITSEHGNITQEKYDGAQANRSQISEKLQCRTDAKKLDSMTKKDCSKKHGGFNNEFHC
AFCRSSEESEASGRMVHYFNGKPIDTHDIKNSKVLHAHWNCVEWAPNVYFDGDTAINLEA
ELGRSRRIKCGCCGNKGAALGCYEKNCRKSFHVPCAKLMPQCQWDTENFVMLCPLHPDSK
LPSQDPGHLERKSSCASKRQSNTKCIAVAREISNNGRFTFRESSKKLVLCCSALTIAERE
AVDEFQRLSGVPVLKNWDDSVTHIIASTDENGACKRTLKILMGILKGKWILGIEWIKACI
QAMEQIEEERFEITLDVHGIRDGPQLGRLRVLNHQPKLFSGFKFFFMADFAPSYKGYLQQ
LVTAAEGTILLRKPVSSNNQNISCSSPNCQVFIIYSLELPDQCNPAEKNNILCRRRFDAE
LLAKSATAKVATNLWLLNSIAGSKLTSLEE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgggggatcccagccacctggagaagatgggaagagagctcaaatgcccgatttgtttg
agccttttaaactccgccgcttcgctgggatgcaaccacgtgttctgcaatgtatgtata
gagaaatcaatgaaatcgggttcgaactgcccagtttgtaaggtgccttataggcgaaga
gaagttcgtcctgctccacacatggataatttggtgagcatttacaaaagcatggaagct
gcttcaggaatgaacatatttgttactcagaatttgtcttgtgctaagttatctgataga
gacaaacaagtagaaggtgatggcaatggttcaaaacggcttaatgcagaaaccagcgag
agcacagcttatatacaaagaactttgaaaaaagagtcacaaacaatacaaaaatccaag
cggaagatttctgcttcttcccctctgaaaccttcatttccaagaaagaagagggttcag
gtgccacaacgtcccctttcagaaacacctactcgacctgcaaagttagcaagtagttgt
aatgaggtgaatgaagaaccaagaaaaagtacagttgcttcggaggataaaggtcagcca
gttctttcaccttttttttggctgagagaaagagaagaagaagatgagaagtcgaatcag
cagtcggatttggatcaacctactgactcatgggcgatgaatgttcttgccttcagtgat
atcaaggattcactggatgaaagcccttcaaagccccaaatggaggaagtgtgtggcaat
ccatccaatgacttggatctctttgatagtgaaatgtttgaatggactcaaagagcctgt
tcccccgaactttgttcaagtccctttaaactgcaggatgaagatatttctggaactgaa
acagatttattagcagcagtaccgaatgaagaactaggaaagcaaaatccaaatggaaat
aataatcaacgtggtggtatctgggatgagttggttcctgatgtgctccctccggaaggc
aacagtatgaaggatcattctaggtgtgctaaacttaccaaaagaggtaggaagaaaaag
ggaattgcactgaagaaatgttctaaaagattggcagaatcagcgactgggaattgttcc
aatccagctaccggaactgaatgcttcagtcagaagcaggagaacgatgttattaacagc
tttggtagtttgaaaattggaaccaaaagaagcaagaagaaaattcactttggtactgct
gcaaataggacgacacttgaaagtgttcctgccgttccaattaatttaccaactccaaat
gagaatttcaaaactgagacacgaacctttccagagggggaaaaggtcaatcaaatccag
gaaaagaggaggaataatgacagagccagcaagacaatgcactttggtattgatgctaat
aaagcaactcctgataatactcttacagatttggttagtttaggagctccagatggtgga
cagaagaattttggaacggagacattagctttaccagaaggcgaaaaggcttgtcaactc
cctgaaaatagttgcacgaaaaccagaggcaggaagaaagcgcattttggtaacaatgct
aataagaggattcttgaagatattcctgcccatcccattagtttaggaactccaaacaat
ggtcctgagaattttggaacagagttattagcttttcaagaagtggaaaaggttagtcaa
tttcctgaaaaaaatcgcaagaatggcggagtccgcagagaacagggtatggtccaatgc
tgtaggaagtctaagaaacaaaagctggattcagttgacgatgacctgcaagagaacccg
tctttcaatcagaatcagcatgatgattgtgctactcctggattgaccaccacaccttct
gtgattgctacttcaactgatcaaaagagggaacacaagaaacaagagaaaaattcctct
gtttgtgcaataactagcgagcatggtaacatcactcaagagaagtatgacggtgctcag
gcaaatcgaagtcagatttctgaaaagcttcagtgccgtaccgatgcgaaaaaattggat
tctatgaccaaaaaagattgttcaaaaaaacatggaggattcaataatgaatttcattgt
gctttctgtcgctcatcagaagagtcagaggcttctggaagaatggtccactatttcaat
gggaaaccgattgatacacatgacataaaaaactcaaaggtcctacatgcacactggaat
tgtgttgaatgggcccccaatgtttattttgatggcgacactgcaattaaccttgaagct
gagctcggtagaagccgaagaattaaatgtggttgctgtggaaataagggtgctgctctt
gggtgttatgagaagaattgtcgcaagagctttcacgttccttgtgcaaagttgatgcct
caatgtcaatgggacaccgaaaatttcgtgatgttatgcccccttcatccagactctaaa
ctgccaagccaagatccagggcacctagaacggaaaagcagctgcgcttctaagcgacaa
tcgaacactaaatgtatagctgttgcccgtgagatcagcaataatggaaggtttacattt
cgtgaatcatctaagaaattggttctgtgctgttcagctctcaccatagcagaaagggaa
gctgtagatgaatttcagagattatctggagttccagtgttaaaaaattgggatgatagc
gttacacatattattgcatcaacagatgaaaatggagcatgtaaaagaaccctcaaaatt
ttgatgggtattttgaagggaaaatggatattgggaattgaatggattaaggcttgtata
caagccatggaacaaatagaggaagaacgctttgagattactcttgatgtccatggaatc
agagatggccctcaacttggaagattaagagtcctgaaccatcaaccaaaacttttttct
ggattcaagttcttctttatggcggactttgcaccttcatacaaaggatatctccaacaa
cttgtgactgctgcagaaggaactattctgcttagaaaaccagtttcaagcaacaaccaa
aacatctcttgttcttcacccaactgccaagttttcatcatttacagtcttgagcttcct
gatcaatgcaatccagctgaaaagaataacattctctgtcgcaggcgtttcgatgccgag
ttgcttgctaagtcagccacagccaaagttgccaccaatttgtggcttttaaactcgatt
gcaggcagtaaattaacaagccttgaagagtaa
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