Benincasa hispida (wax gourd): 120072750
Help
Entry
120072750 CDS
T07258
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120072750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120072750
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120072750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_15
HAT_Syf1_CNRKL1_C
TPR_19
TPR_2
TPR_16
TPR_CcmH_CycH
TPR_6
ANAPC16
Iml2-TPR_39
TPR_8
NRDE-2
DUF1993
TPR_Slam
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
120072750
NCBI-ProteinID:
XP_038881157
LinkDB
All DBs
Position
3:52876781..52921935
Genome browser
AA seq
764 aa
AA seq
DB search
MVSEGSESKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAKY
WKQYVEAHMVVNNDDATRQIFSRCLLNCLHIPLWRCYIRFIKKVNERKGMEGQEETRKAF
DFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQESQRMTAVRKVYQKAIITPTHHIEQLW
RDYENFENSVSRQLAKGLVSEYQPKFNSARAVYRERKKYVDEIDCNMLAVPPTGSPKEEL
QWMSWRRLIAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYHYPDVWYDYAMWHANNGSTD
AAIKVFQRALKALPNSDMLKYAYAELEESRGSLQSAKKIYESLLSDGVNATALAHIQFIR
FLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMAFCLDKDPKIAHNVFEDGMKRFMNE
STYILEYADFLARLNDDRNIRALFERALSTLPLEESAEVWKRFIHFEQTYGDLASMLKVE
KRRKEALSQMGEDGASTLESSLQDVVSRYSFMDLWPCTSSDLDNLTRQEWLAKNINKNSE
KSGLPSGTGFLDTSSAGFMSHSIPSTNVVYPDTSQMVIYDPSQKLGILPTATASGLPANP
SNPVSVASGGPTNVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDIPTVPL
VKSGATPAQVSGGPVPTTSDLSGSSKSHAFSNSSLKHTRDKQSGKRKDYDRQEDNESTTV
QSQPLPKDFFRIRQIQKARGATSSQTGSVSYGSAISGDLSGSTG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcagagggatctgaatcaaaggataaaacaacgagcaataagcttttggatggt
ttgaagtacaatgttgaggtggcagaaagtgttgctaatgaggcgcagcgtttgccaata
ttggaggcaacaccattatatgagcaactgctgacggtgtatcccactgctgctaaatat
tggaagcaatacgtggaggcacacatggttgtaaataatgacgatgctacaagacagata
tttagccggtgcttattgaactgtctacacatccctctttggcgttgctacatccgattc
attaagaaggtgaatgaaaggaaaggaatggaaggccaggaggaaaccagaaaagctttt
gattttatgcttagctatcttggtgttgacatatcatctggccctgtgtggatggaatac
attgccttcttaaagtcacttccggctctaagctcgcaggagtcacaacgtatgactgca
gtgcggaaggtctaccagaaagctattatcactcctacccatcacattgagcaactgtgg
cgggactatgaaaattttgagaattctgtcagccgtcaactggccaagggactagtgtct
gaatatcaaccaaaatttaatagtgctcgagctgtctacagagagaggaagaaatacgtc
gatgagattgattgcaacatgcttgctgtaccaccgactggctccccaaaggaagagctg
caatggatgtcatggaggaggttaatagcgtttgagaaaggaaatcctcagaggatagac
agtgcatcatccaacaaacggattatattcacatacgaacagtgtcttatgtacctgtac
cattatcctgatgtatggtacgactatgctatgtggcatgcaaataatggatcaacagat
gctgcaattaaagtatttcagcgagctttaaaggctcttcctaactcagatatgctaaaa
tatgcttacgccgagctagaagaatctcgtggatcacttcagtctgcaaagaaaatatat
gaaagccttttgagcgatggtgttaatgcgactgcactagctcatattcaatttatccgt
tttcttagaagaaacgaaggagttgaggctgctcgcaagcacttcttggatgctcgcaaa
tccccaaattgcacgtatcatgtttatgttgcttatgccatgatggccttttgtctcgac
aaggatcccaagattgcacataatgtttttgaagatggaatgaagcggtttatgaatgaa
tccacgtatattcttgaatatgcagatttccttgctcgcttgaatgatgacagaaatatt
cgggctttatttgaacgtgctttaagtaccttacctctagaggagtctgctgaggtttgg
aaacggttcatccattttgagcaaacttatggagacctggctagcatgctgaaggttgaa
aaaagaagaaaagaagctctttctcaaatgggtgaagatggagcatcaacattggaaagt
tcattgcaagatgttgtgtcccggtatagttttatggatctctggccttgcacatctagt
gatctggataatttgaccagacaagagtggctcgctaagaacataaataagaactcagaa
aaatctggtctgcctagtggaactggctttttagataccagttctgctggttttatgagc
cattcaattccatctacaaatgttgtttatcctgatacctctcagatggtgatttatgac
cccagccaaaaattaggaattcttccaactgcaacagcttcaggacttcctgctaatcct
tcaaatccagtttctgttgcgagtggaggaccgactaatgtatttgatgaaatattaaaa
gcaacaccagctgcattaatagcattccttgcaaacttacctgctgttgatggtccgacc
ccagacgttgatattgtactatcagtttgtcttgagagtgacatacctacagttccattg
gtcaaatcaggggcaacaccagcacaagtttcgggtggtcccgttcctaccactagtgac
ctttctggttcaagcaagtctcatgcattttcaaattcctccctaaagcatactagagac
aagcaatcgggaaagagaaaagattacgacagacaagaggataatgaaagcacaacagtc
caaagtcagccattgcctaaagattttttcaggatacgacaaatccagaaagcgcgagga
gctacttcttcccaaacaggttctgtttcctatggaagtgctatttctggagatctatct
ggtagcactggttga
DBGET
integrated database retrieval system
