Benincasa hispida (wax gourd): 120072970
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Entry
120072970 CDS
T07258
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120072970
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
bhj02000
]
120072970
Transporters [BR:
bhj02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120072970
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120072970
NCBI-ProteinID:
XP_038881443
LinkDB
All DBs
Position
3:complement(62217597..62305389)
Genome browser
AA seq
1923 aa
AA seq
DB search
MGLAWRQLQVMLRKNWLLKIRHPFITSAEILLPTVVMLLLIAVRTQVDNTVHPPQPHIEK
GMFVEVGKGISPSFQEVLESLKKHGEYLAFAPDTVETKTMLHLMSIKFPLLKVVTRVYKD
EQELETYIRSDLYGNCNLAKNMNCSNPKIKGAVVFHEQGPKLFDYSIRLNHTWAFSGFPN
VRSIMDMNGPYLNDLELGVTNIPTMQYSFSGFLTLQQVMDSFIIFASQEMETNSLHVNNK
HTLSNSSTRPSLPNMSWTQFSPSKVRISPFPTREYVDDEFQSIVKKVMGVLYLLGFLYPI
SRLISYYAFEKEEKIKEGLYMMGLKDGIFHLSWFISYAVQFSVSAGIITFCTMHNLFKYS
DKTVVFIYFFLFGLSAIMFSFLISTFFKRAKTAVAVGTLSFLGAYFPYYTVNDETVSMIV
KTTASLFSPTAFALGSINFADYERARVGLRWSNLWRASSGVNFLVCLLMMFFDALLYCAI
GLYMDKILSRENGFGYSWSCLLGNFFSMKRSIIKDQTPIECKIADAEIANASRNNAFDPV
VEAISLDMKQQELDSRCIQIRNLHKVYDTKMGKFCAVDSLQLTLYENQILALLGHNGAGK
STTISMLVGLFPPTAGDALVLGKNIITDMEEIRKGLGVCPQNDILFPELTVQEHLEIFAT
LKGVKEDFLERTVVDMVNEVGLADKINTPVNSLSGGMKRKLSLGIALIGNSKVIVLDEPT
SGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKH
QYGVGYTLTLVKSAPTVSVAADIIYRHIPSAVCVSEVGTEISFKLPISSASSFESMFREI
ESYMRRSVSNSAIDCSSENKLCYEKDHLGIDSYGISVTTLEEVFLRVAGCDFDVAPSEQK
KSSLLMSSVVSDISVHQVPSKVSESQHFGKSEKSGFLALVVKRACGLIFSTTFSIINFLS
LGVPGCDILWRSKFWQHSKALFIKRAITARRDRRTVVFQLLIPVVFLFFGLLFLKLKPHP
DQQSVTLTTSEFNPELIGGGGGGPIPFDLHWHISKQVAHYIEGGWIQKYKPSAYKFPDAE
KALSNAIEAAGETLGPILLSMSEYLMSSFNESYQSRYGAIVMDDQNSDGSIGYTVLHNCS
CQHSAPTFINIVNAAVLRLATGDQNMTIQTRNHPLPMTKSQRLQRHDLDAFAAAIIVNIA
FCFIPASFAVSLVKERETKAKHQQMISGVSVLSYWISTYVWDVVSFLVPTGLALVLFYIF
GMDQFIGKGRFLATAVIFLEYGLAIASSTYCLTFFFWDHTVAQNVVLSVHFFTGLILMVI
SFIMGLIETTAKTNSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVYNWNVTGAS
ICYLGVQSLCYFLLTLGLELLPLQKLTAIAVKEWWMKRWRNNLTNLKTETSSPSLEPLLA
PSSGYIIPDLDLDVDVAAERNRVLSGSIDNAIIYLSNLRKVYPGENYLHKKIAVDSLTFS
VQEGECFGFLGTNGAGKTTTLSMLTGEESPSEGTAFIFGKDIRTDPKAARCHIGYCPQFD
ALLEYLTAKEHLELYARIKGVPELKIDDVVMDKLVDFDLLKHANKPSYSLSGGNKRKLSV
AIAMIGEPPVVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTR
IGIMVGGRLRCIGSPQHLKTRFGNHLELEVFRHTNFLDVINSLILFIFLQVKPHEINLED
LYNFCQHIREGFFDFPSHPRSLLNDIEVCIGAIEPVTPENQSVTEISLSRQMLTIIGRWL
GNEERIKTLVSSPSTAPGVFGEQLTEQLFRDGSIPLPIFSEWWLATEKFSEINSFILSSF
SGATFHGCNGLSMKYQLPYGEDGLSLADAFGHIERNRKQLGIAEYSLSQSTLETIFNHFA
SNP
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atgggacttgcatggaggcagctccaggttatgctccgcaagaactggcttctcaaaatt
cgccacccgttcatcacttccgcagagattttacttccgactgtggtgatgttgttactc
atagctgtaaggacgcaagttgataacacagtccatcctccgcaaccgcatatagagaaa
ggaatgtttgtagaagttggcaaaggtatatccccgagtttccaagaagttctggagtca
ctgaagaaacatggagaatatttggcttttgcaccagatacagtcgagacaaagaccatg
ctacatttgatgtcaataaaatttcctcttttaaaggtagttactagagtttacaaagat
gaacaagagctggaaacctacattcgttctgatctatatggaaactgcaatttagctaag
aacatgaactgttcaaatcccaaaattaaaggagccgtggtattccatgagcaaggtcca
aagttatttgattatagcattcgtctgaatcatacttgggctttctcaggatttcctaat
gttagatccatcatggacatgaatggtccgtatctcaatgacttggaactgggtgtaact
aatataccaacaatgcaatatagcttcagtggatttttaactctccagcaagtcatggat
tcattcataatatttgcttcccaggaaatggaaactaatagtctccatgtaaacaataaa
catactttatcaaactcttctactagaccctcattgccaaacatgtcatggacacaattt
agcccttcaaaagtacgaatttccccttttccaactcgggagtatgttgatgatgaattc
cagtctattgtcaagaaagttatgggtgtgctgtatctgttgggatttctttaccccatt
tctcgcctcatcagctattatgcatttgagaaggaagagaagatcaaagaaggcctctac
atgatgggtttgaaagatgggatattccatctctcttggtttatttcatatgctgtgcag
ttttcagtatcggctggaattatcactttctgcactatgcataaccttttcaagtacagt
gataagacagtggtcttcatctacttctttttatttggattaagtgcaatcatgttttca
tttttgatctctacattcttcaaacgagcgaaaactgctgtggcagtgggaacactttct
tttctgggtgcctattttccttactataccgtaaatgatgaaactgtgtccatgatagtg
aagacaactgcttcattgttttcaccaactgcttttgctctagggtctattaactttgcg
gattatgaacgtgctcgtgttggacttcgatggagcaacctatggagggcatcctctgga
gtaaactttttggtgtgtcttttaatgatgttcttcgacgcgcttctgtattgtgcaatt
ggtctttacatggataagattctttcaagggaaaatgggtttggttattcatggagctgc
cttctcggcaatttcttctcaatgaaaaggagtattatcaaagatcagactcccatagag
tgtaaaattgctgatgcagaaattgctaatgcgtctagaaataatgcctttgatcctgta
gttgaggctattagtttggacatgaagcaacaagagctcgatagcagatgcatccagata
agaaatcttcataaggtttatgacacaaagatggggaaattttgtgctgtcgactctctc
caactcaccctctatgaaaatcagattctagcacttttagggcataatggagctgggaaa
agtacgacaatatccatgcttgtaggtctctttcctcctactgctggggatgctctggtg
cttggcaagaatatcattacagatatggaagagatacggaaagggttgggtgtgtgccca
caaaatgatattctgttcccagagttgactgtacaagaacatttggaaatatttgccaca
ttgaaaggagtgaaagaagactttttggaaaggaccgttgttgatatggttaatgaagtt
ggcctggctgataaaattaacactcctgtgaattctctttctggcggaatgaagaggaaa
ctgtccctaggaattgcattgatagggaacagcaaggttatcgtgcttgatgagcccaca
agtggaatggatccatactctatgcgattgacatggcaattaattaaaaagataaaaaaa
ggtaggatcatattgctgacaacacactcaatggatgaagctgatgaactgggagatcgg
atagccattatggctaatggatctctgaaatgttgtggaagttctcttttcttaaagcat
cagtatggagtcggttatactcttactttagtgaagtctgcacccactgtctccgttgct
gcagatatcatctatcgtcacattccatcagcagtatgtgtgagtgaggttgggaccgag
atctcctttaagcttcctatatcatccgcttcatcatttgagagcatgtttagggaaatt
gaaagttacatgcgcagatcagtttctaactccgcaattgattgttcttcagagaataaa
ctttgttacgaaaaagaccatcttggaattgatagttatggtatatctgttaccactctt
gaggaagtattcctaagagttgctggatgtgattttgacgttgcacccagtgagcagaaa
aaaagctctctccttatgagttctgtggtttcagatatttccgttcatcaagtgcctagc
aaagtctctgagtctcagcattttgggaaatctgaaaagtctgggttcttggctcttgta
gtaaaaagagcatgtggtttgatattttcaacaactttcagtattattaactttctgagt
ttaggggtccccgggtgtgatatactatggagatcaaagttctggcaacattcaaaagca
ttatttattaagagggccataactgctcgtagagaccgcaggacagttgtattccaactt
ttgattcctgttgtattcttgttttttggtcttctctttcttaagctcaagccacatcca
gaccagcagtcagtgactttgacaacttcagaatttaatccagaattaattggtggtggt
ggtggtggtccaattccttttgatctgcactggcatatttccaagcaggttgcacattat
attgaaggcggttggattcaaaaatataaacctagtgcttataagttccctgatgctgaa
aaagcattatccaatgcaatagaagcagcaggggaaactctgggaccaattctactatcc
atgagtgaatatctgatgtctagcttcaacgaatcttaccaatcaaggtatggagcgatt
gtaatggatgatcagaatagtgatggcagtataggatatactgtactgcacaattgttcc
tgtcagcattctgctccaacctttatcaatattgtgaatgccgcagttctaaggctggct
actggtgaccagaatatgactattcaaacacgaaatcaccctctccccatgacaaaaagc
cagcgtttgcaacgacatgatctggatgcttttgctgctgctatcatagttaatatagca
ttctgttttattcctgcatcatttgctgtctctctcgtgaaggaacgtgaaacaaaagct
aaacaccaacaaatgatcagtggggtttcagtgctttcatactggatatcgacttacgta
tgggacgttgtcagtttcttggttcctactggtttagcactagtactcttttacatcttt
ggtatggatcaattcattggtaaaggtagatttctagcaacggctgttatatttttggaa
tatggactggccattgcatcgtcaacatattgccttacatttttcttttgggaccatact
gtggctcagaatgtggttctgtcggttcactttttcactggacttattcttatggttatt
tcattcattatggggcttattgaaacaacagcaaaaacaaattcttttctgaagaatttc
ttcagaatatcacctgggttttgctttgctgatggacttgcctcgttggctcttcttcgg
caggggatgaaagataaaacaagtgatggggtttataattggaatgttaccggtgcctca
atttgttatctcggtgtacagtccctgtgttactttctcttaactcttggtcttgaactg
ctgcctctccaaaaattgactgcaattgcagtcaaggaatggtggatgaagcgttggagg
aacaatctcacaaatcttaaaactgaaacttcatcccccagcttggaacctcttcttgcg
ccttcttcagggtatattattcccgaccttgatctcgatgtagatgtggcagcagaaaga
aatagggtcctatcaggttctatcgacaatgccattatctacttgagtaatcttcggaag
gtatatcctggagaaaattatctccataagaaaattgcagtggattctttaactttttca
gttcaagagggagaatgctttgggtttttaggcacaaatggtgctgggaagacaacaact
ctatctatgctcactggagaagaatctcccagtgagggaactgctttcatttttggaaaa
gatataagaactgatcctaaggctgctcgttgccatattggatattgcccacagtttgat
gctctattagagtaccttaccgctaaggagcacctagaactttatgcaagaataaaaggt
gttccagagttgaagatagatgatgtcgttatggataaattggtggactttgacttgctg
aagcatgccaataaaccctcatattcactcagtggaggaaacaaacgtaaactctctgtt
gcaattgcgatgattggagaacctcctgtcgttattcttgatgagccatccacagggatg
gatcccatcgccaaacgattcatgtgggatgttatatcccgaatatctacaagacgagga
aagacggcagttatcctcaccacacacagcatgaacgaagcgcaagcactttgcactcgt
attgggataatggttggaggacggctacgctgcataggaagtccccagcatttgaaaaca
cgattcggaaatcatcttgagctagaggtattcaggcatactaattttttggatgtcatc
aatagtttgattttgttcatctttctacaggtcaaacctcatgaaatcaacttagaggac
ctgtataacttttgtcaacatattcgtgaggggttttttgattttccttcacacccgaga
agcttattgaatgacattgaagtttgtatcggagctattgagcccgtcacaccagaaaac
caatcagtgacagagattagcttgtctaggcaaatgttaaccataattggacgttggctt
ggaaatgaagaaaggataaaaacacttgtatcctccccgtctactgctcctggagttttt
ggtgaacaattgacagagcaattgtttcgagatggcagcataccgttacctatattttct
gagtggtggttagcgacagagaagttctcggagatcaattcgtttattctctcttcattt
tccggtgcaacattccatgggtgtaatggattgagtatgaaatatcagttgccttatggg
gaggacggcctctcacttgcagatgcttttggacacatagagagaaacagaaaacagctt
ggaattgccgaatacagtcttagccaatcgacgttagaaacaatttttaatcattttgca
tcgaatccttaa
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