Benincasa hispida (wax gourd): 120073012
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Entry
120073012 CDS
T07258
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03020
RNA polymerase
bhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120073012
09124 Replication and repair
03420 Nucleotide excision repair
120073012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120073012
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120073012
Enzymes [BR:
bhj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120073012
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120073012
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120073012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
120073012
NCBI-ProteinID:
XP_038881491
LinkDB
All DBs
Position
3:8259920..8268477
Genome browser
AA seq
1198 aa
AA seq
DB search
MDDYEEYDRNMNDDDDIEAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT
MQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKA
ARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE
KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAES
QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHIC
YDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLP
HVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR
KLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL
NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV
YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRL
RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPED
GGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGV
CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH
LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK
EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARYS
RRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT
YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD
NISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI
LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIAN
LKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQMKKGS
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggacgattacgaagagtatgatcggaatatgaatgacgacgacgatattgaggctatc
cccgacgatgaagaagagatcacccaggaagatgcttgggcagtaatttcagcctatttt
gaagagaaagggttagtccgccagcagctcgattccttcgatgagtttattcagaatact
atgcaggaaattgtggacgagtctgcagacatcgagattcgtcccgagtcacagcacaat
cccgggcatcagtccgatgttgctgagacaatatacaagatcagctttggtcagatatac
ttgagtaagccaatgatgactgaatctgatggagagactgcaaccttatttcctaaggct
gcacgattgaggaatctaacatactcagcccctttgtacgtggatgtctctaaaagagtc
ataaagaaaggtcatgatggtgaagaagttactgaaacccaagattttacaaaagttttt
attgggaaggttcccatcatgctccgatcgagttattgcacattgtatcaaaattctgag
aaggatctgactgagctcggggagtgtccatatgaccaaggaggctattttattatcaac
gggagtgagaaggttcttattgcacaagagaagatgagcacaaatcatgtatatgttttc
aagaaaagacagcccaacaaatacgcctttgtggcagaagttcggtctatggccgagtca
caaaatagaccacctagtaccatgtttgtacggatgctttctcgaacaagtgccaagggg
ggctcttcaggacaatacatacgtgccactctgccttacattagaaatgagattccaatt
ataattgtttttcgtgctctaggatttgttgctgacaaagatattctagagcatatatgt
tatgacttctctgatactcaaatgatggagttgcttcggccttccctggaagaggctttt
gttatccaaaatcagcaggttgcactagactatattgggaagagaggatcaactgttggt
gtgaccaaggaaaagaggattaagtatgccaaagagatccttcaaaaggaaatgcttcct
catgttggcgttggtgaattttgtgagacgaagaaggcatattattttggttatataatt
caccggctactcttatgtgcccttggccggagagcagaagatgatagggaccactatggg
aacaaaagactggaccttgctggtcctttacttggaggcttgtttagaatgctatttaga
aagttaacaagagatgtgagaggttatgtacaaaagtgtgttgataatggaaaggacgtc
aatttgcaatttgccatcaaagcgaaaactattactagtggcctgaaatattcgcttgcc
accggaaactgggggcaggcaaatgcagctggtacaagagctggagtatcacaggtgtta
aatcgtttgacatatgcatcaactttgtctcacttacgaaggctgaattcacccattgga
cgagaaggtaaattggccaagcctcggcagttgcataattcacaatggggaatgatgtgt
cctgctgaaacacctgaaggacaagcatgtggactggtaaaaaatcttgcattaatggtt
tatattacggttggatctgcggcatatcctattttggaatttttggaagaatggggcaca
gagaattttgaggaaatttctcctgctgtcattcctcaagcgacaaaaatttttgtcaat
ggttgttgggttgggatccatcgggatcctgaaatgttggtgaagacgttgagacggctg
agacgacgagttgatgtaaatactgaagttggtgtagttagagatatccgtctgaaagaa
ctacggatatatactgattatggccgttgcagtcgtccattatttattgttgagaaacaa
aggcttctcataaagaagaaggatatccatgctcttcagcagagggaatctccagaagat
ggtggttggcacgatcttgtagcaaagggattcattgaatacatagacactgaagaagag
gaaactaccatgatttccatgacaattagtgatcttatacaagcaaggatcaaccctgtt
gaggcttattctgacacctacactcactgtgaaatccatccatcattgattttgggtgtt
tgtgcttccattattccatttcccgaccataaccagtccccacgtaacacgtatcaatct
gctatgggtaaacaagctatggggatttatgtcaccaactaccaatttcgaatggatact
ttggcctatgttttgtattatccacaaaagcctcttgtgactacacgagctatggagcac
ctccatttcaggcagcttccagctggcattaatgccattgttgccatcgcttgctactct
ggttataaccaggaagactctgtgatcatgaatcaatcctccattgaccgtggatttttt
aggtcacttttcttccggtcatacagggatgaggagaaaaagatgggaactcttgtaaaa
gaagattttggacggccggacaggagtaatactatgggtatgaggcatggctcctatgat
aaattggatgacgatggtcttgcaccccctggtactagagtatcaggtgaagatgttatt
attggaaagactactcctatctctcaggaagaagctcagggacaagctgcacgctactca
agacgtgatcatagcattagtttacgtcacagtgaaaatgggattgtagatcaagttttg
ctgactacaaatgctgatggattgagatttgtgaaagtaagggtaagatctgttcgaata
cctcagattggggataagttcagtagtcgacatggtcaaaaagggaccgtgggaatgact
tacacacaagaagacatgccttggactgtggaaggaatcacccccgatataatcgtgaat
ccacatgctattccgtctcggatgacaattggtcagcttattgagtgtatcatggggaag
gtggcagcccacatgggaaaagaaggagatgctaccccatttactgatgtcactgtggat
aacatcagtaaggctttgcataagtgtggttatcagatgcgtggatttgaaaccatgtat
aatggccatacaggccggcggctctcagcaatgatattccttggtccgacctactaccaa
aggctgaagcatatggttgatgacaaaatacattcacgtggaaggggtcctgtgcagatc
cttacaagacaacctgctgagggtcggtcacgtgatggtggtctccgatttggggagatg
gagcgtgattgcatgattgcccacggtgctgctcatttccttaaggagaggttgttcgat
caaagcgatgcttataggatccatgtctgtgagtgctgcggattgatagccattgcaaat
ctgaagaagagttcctttgaatgtaggggatgcaaaaacaagacagacatcgttcaggtg
tatatcccttatgcctgtaagcttctcttccaagaacttatggctatggcaatagctccg
cggatgttcacaaaggagattaaaccattaaaagaccaaatgaagaaaggatcttga
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