Benincasa hispida (wax gourd): 120073284
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Entry
120073284 CDS
T07258
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120073284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120073284
03041 Spliceosome [BR:
bhj03041
]
120073284
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120073284
Spliceosome [BR:
bhj03041
]
Complex B
Other components
Prp19-related factors
120073284
Complex C
120073284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21_C
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
120073284
NCBI-ProteinID:
XP_038881960
LinkDB
All DBs
Position
3:9514044..9520234
Genome browser
AA seq
911 aa
AA seq
DB search
MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARAEAPFKKRFIIYERALKALPGSY
KLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDLIEFL
VNSNLWQEAAENLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYSQFEESML
AHKMENIDLSDEEDEVQVNGLEEEEEEDIRLDIDLSVSKFEKKILQGFWLYDDNDIDLRL
ARLDHLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTRQILTYTEAVRTVDPMKAV
GKPHTLWVAFAKLYEAHKDLPNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHKNFKG
ALELMRRATAEPSVEVKRKVAADGNEPVQMKVHKSLRLWTFYVDLEESLGTLESTRAVYE
RILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY
GKTKLERARELFEHAVETAPADSVRPLYLQYAKLEEDHGLAKRAMKVYDQATKAVPNNEK
LSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDQDVKTMCLKYAELEKSLGEIDRSRGI
YVFASQFADPRSDLNFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ
KDQTLNLDEAKDKLKQAGVTEDEMAALERQLAPAIEDTAKDNSRKVGFVSAGVESQADGG
LKVTAHQEDIELPDESDSEEDENVEIAQKEVPSAVFGGLARKKEDSDEVDGEKDDDSHLG
ALERIKRQKKA
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttcccaagatttatatccatcacaagatgaccttctctacgaagaagagctc
cttcgaaatccttttagtttgaagttgtggtggcgctacctcatagcacgagcagaagca
ccattcaagaagcgattcattatctacgagcgggctctcaaggccctccccggaagctat
aagttatggtatgcatatctgcgcgaacgcctcgatctggtacgaaatcttcccattact
cattctcaatacgaaactcttaacaacacgtttgaacgagcgcttgtgactatgcataaa
atgccaagaatatggataatgtacctacagactttgactaaccagaaattagtgacccga
acgcgtcggacgttcgaccgagccctttgtgctcttccagttacacagcacgatcgcatt
tgggagccataccttgtttttgttagccaaaagggtattccaattgagacctcacttaga
gtttatcgaaggtatttaaaatacgaccctacacacattgaagacttgattgaatttttg
gttaattcaaatctgtggcaagaagctgcagagaatttggcttccgtgttgaatgacgat
caattttattctataaaggggaagaccaagcatcggttgtggttggagctgtgtgatttg
cttactagacatgctactgaagtttcagggttgaatgttgatgccataataaggggcggc
attaggaagttcaccgatgaagtagggcgcttgtggacatcactcgcagaatattacatc
agaaggaatttacacgagaaggcaagagatatatttgaagaagggatgactactgttgtt
actgtaagagattttagtgtgatatttgattcgtactctcaattcgaggagagtatgcta
gctcataaaatggaaaatatagatttgagtgatgaggaagatgaagtacaggtaaatggc
ctggaggaggaggaggaagaggacatccgattagatattgatttatcagtttctaagttt
gagaagaaaatacttcaagggttttggctgtatgatgataatgacattgatctgagacta
gctaggttagaccatcttatggacagaagaccagaattagctaatagtgttcttctacga
caaaatcctcataatgttgaacaatggcatcggaggattaaattatttgagggcaatccc
acaagacaaatattgacgtataccgaggctgtgagaacagtggatcccatgaaagcagta
ggtaagcctcataccttatgggttgcttttgctaagttgtatgaagcacacaaagatctt
ccaaatgcaagagttatttttgacaaagctgtacaagttaactataagacagtggataac
ttggctagcatttggtgtgaatgggcggaaatggaattgagacataaaaacttcaaaggg
gctttggagctgatgcgtcgtgctacagcagagccatctgttgaagtcaaacgaaaagtg
gctgctgatgggaatgaaccagtccagatgaaggtgcacaagtccctaagactttggacc
ttttatgtggatctggaagaaagtcttggaaccttggagtctacccgtgcagtttatgag
cgaatactggacttaagaatcgctaccccacaaataataatcaactatgccttgcttctt
gaggaacataagtactttgaagatgcattcaaggtatatgaaaggggcgtgaagattttc
aaatatcctcatgtcaaagatatatgggtcacatatctatccaagtttgtgaaaagatat
gggaagacaaaattggagcgggcaagagaactatttgagcatgcggttgaaacagcacct
gctgattctgttaggcctttgtatcttcaatacgcgaagcttgaggaagaccatggtttg
gcaaagcgagctatgaaggtctatgatcaggcaactaaagctgttccgaacaatgagaaa
ttgagcatgtatgaaatatacattgcccgtgcagccgagatatttggtgttcctaaaact
agagaaatctatgaacaagcaatagaatctggtcttcccgatcaagatgtgaagactatg
tgcttgaagtatgctgagctggagaagagtttgggagaaattgatcgttctcgtggaata
tatgtatttgcttcacagtttgcagatcctagatcagatttgaacttttggaataagtgg
cacgagtttgaggtgcaacatggaaatgaagatacttttagagagatgcttcgtatcaaa
aggagtgtttctgctagctatagccagacacattttattcttcccgagtatctaatgcaa
aaggatcagacactgaacctcgatgaggcgaaagacaaattgaagcaggctggggttaca
gaagacgaaatggctgctctagagaggcagttggcccctgcaattgaagacacggccaaa
gataacagccgtaaagttggttttgtgagtgctggagtggaatcacaggctgatggagga
ttaaaggttactgctcatcaagaagacattgaattgccagatgaaagcgactcggaagaa
gacgagaacgtcgaaattgctcagaaagaagtcccatctgcagttttcggaggtcttgct
cgaaagaaggaagattccgatgaggtggatggagaaaaggatgatgacagccacctaggt
gcgcttgagagaataaaaaggcaaaagaaagcctaa
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