Benincasa hispida (wax gourd): 120073490
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Entry
120073490 CDS
T07258
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120073490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120073490
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120073490
mRNA degradation factors
5'-3' decay
Decapping complex
120073490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIA
Motif
Other DBs
NCBI-GeneID:
120073490
NCBI-ProteinID:
XP_038882433
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Position
1:76207697..76218040
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AA seq
807 aa
AA seq
DB search
MEQPDVKDLRDSAENSSANSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYH
LFVREESAGLGSLSEMDDLASTFAKLNKVVTGPRHPGVIGDRGSGSFSRESSSATDWAQD
GDFCNWLEQHVFDSECAQEEKRWSSQPQSSVRLPDPKPLYRTSSYPQQQPTQHHFSSEPI
LVPKSSFTSFPPPGSRSQHGSPRHLNIPSLADGSQLPFSAPNITSLSKSNLQLAGMHHGL
HYGGNMHQFTTPGLSFSSRPQNQWVNNAGLLHGDHSNLFNSILQQQLSHQNGLLSPQLLS
AHQQLQQHRLHHPVQPSLAHFAALQSQLYNAHSQSSHRAMLGLTDVRDQKPKSQRGKHNM
RSSQQGSETGSQKSDSGSIQFRSKHMTADEIESILKMQHAATHSNDPYIDDYYHQARVAK
KAAGSRLKNAFCPSRLRELPSRSRSGSDQHSHSTPDSLGKIPLASIRRPRPLLEVDPPLS
GSCDGSSEQTISERPLEQEPMLAARITIEDGLCLLLDIDDIDRLLQHNKPQDGGVQLRRR
RQMLLEGLAASLQLVDPLGKSSHGVGPSPKDDIVFLRLVSLPKGRKLLSKFLKLLFPGSE
LARIVCMAIFRHLRFLFGGLPSDPGAAETTSNLSKTVSTCVNGMDLRALSACLVAVVCSS
EQPPLRPLGSSAGDGASIVLKSILERATELLTDPHAASNCSMPNRALWQASFDEFFSLLT
KYCVSKYETIVQSLFSQTPSSTDVIGSEAARAISREMPVELLRASLPHTNAPQRKLLMDF
AQRSMPVSGFSAHGGSSGQMNSESVRG
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacctgatgtcaaggatttgagagactctgcggagaattcctctgccaattcg
ctctttgatgcttcacgatatgagttttttggtcaaaatgtcgtgggagaagtggagctg
ggtggtttagaagaagatgaagatgtccctttatttggatctacagatgaagagtatcat
ttgtttgttcgggaagagagtgcagggttgggatctttatcggaaatggatgatttggca
agtacttttgctaagttgaacaaagttgttactggaccaagacatccaggagtcattgga
gatcgaggatctggttctttttctcgagaaagttcatctgcaactgattgggcacaagat
ggagacttttgtaattggttagagcagcatgtatttgattcagaatgtgctcaggaggaa
aagagatggtcatctcaacctcaatcttccgttcgtcttccagatccgaaacctttgtat
agaacatcctcttacccacagcagcaacctacacaacatcacttttctagtgaaccaatt
ctagtaccgaaatcttctttcacatccttccctcctccaggaagtagatctcaacatggt
tcacctcgtcacttaaatatcccatctcttgcagatggaagtcagttacccttctctgca
ccaaacatcacttctttatctaagtctaatctgcagttagctggtatgcatcatggcttg
cattatggaggcaacatgcaccagttcaccactcctggcctttcttttagtagcaggcca
caaaatcaatgggttaacaatgcaggtctattgcatggggaccactcaaatctctttaac
agtatattgcaacagcaactatctcatcaaaatggccttctgtcccctcagttactgtca
gctcatcagcagctgcaacaacacaggctgcatcatccagttcaaccatctttggcgcat
tttgcagctcttcagtctcagctctataatgcccattcacaatcctcacacagagcaatg
ctcggattaaccgatgtgagggaccagaaacctaagtcgcagcgagggaaacataacatg
cgttcttctcagcaaggttctgaaaccggtagtcaaaagagtgatagtggatccatccag
ttcagatctaagcatatgacggctgatgagattgagagtatcctgaagatgcagcatgct
gccacccacagcaatgatccttacatagatgactactatcaccaggctcgtgttgccaaa
aaagctgctggttcaagattgaaaaatgcattttgtccatctcgattaagagagcttcca
tcccgatctcgtagtggttcagatcagcactctcattccacacccgattcattgggaaaa
atcccccttgcttctattcgtagacctcggcccctgcttgaagttgatcctccgttgtca
ggttcatgtgatggtagttctgaacagacgatatctgagaggcctctggagcaggaaccg
atgcttgctgctagaatcaccattgaagatggcctctgtcttcttctcgatatagatgat
attgatcggcttttacaacataataagccacaagatggaggagtccagcttagacgaagg
cggcagatgctgctggaaggtttggcagcatcacttcagcttgttgacccacttggaaaa
agtagccatggtgttggcccctctccaaaagatgacattgtgttcttgcgtttggtctct
cttcccaaaggtcgaaagcttctttctaaattcctgaagttgcttttccctggtagcgag
cttgcacgaattgtctgtatggctatttttcgtcacttaaggttcttgtttggtggactt
ccatctgatcctggagcagctgagacaacatctaatctttccaagactgtttctacctgt
gttaatggtatggaccttcgtgcactaagtgcttgtcttgttgcagttgtctgttcctct
gagcagccaccacttcgcccccttggaagttctgctggagatggggcctctatcgtactg
aagtccattcttgaaagggctactgaactattaaccgatcctcatgctgctagtaactgt
agcatgcctaaccgtgcactctggcaggcatcctttgatgaattcttcagtctccttacc
aagtactgtgtgagtaaatatgagactatagtgcagtcattattttcacagacgccatcg
agtactgatgtgatagggtcagaggcagccagagccatcagccgtgaaatgcctgtggag
cttctccgtgctagtcttccccacacaaatgcaccccaaaggaagcttttaatggatttt
gcccagcgttcaatgccagtttctggattcagtgcccatggtggaagtagtgggcaaatg
aattcagaatcagttaggggttag
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