Benincasa hispida (wax gourd): 120074442
Help
Entry
120074442 CDS
T07258
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bhj03036
]
120074442
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120074442
microRNA pathway
RISC loading complex
120074442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120074442
NCBI-ProteinID:
XP_038883493
LinkDB
All DBs
Position
1:11737023..11771217
Genome browser
AA seq
1990 aa
AA seq
DB search
MEDETRVPGSFSSEPTCSLGVSSFWLDACEDISCDIINDFVDFHASIAPGSSAEHTSDQQ
NLANDFFGGIDHILDSIKNGGSLSPVTCNGDRDCTVGEGFFIENEASGVRGMPVDSSTVQ
SNGVQIEILQCNGLSKDNLDNGRHICERYESDDGFQQPNRYEGLRVVEIPRRNGIQKHEG
SNDVPLRDWGCDNEERSNKRPRISNGNNERHYANRGQCPSRDREKFHTRKRLRDRDEIGR
REKGYFRRREHYCTSGRDSRDRDLGEREQKGYWERDKSGSNDMVFHSGMWEADRNRETMT
DNDKNLEFQGTAEKSSEEIKEKNPEEQARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVL
LIKSIYNDLQTRNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRW
QREFETKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTP
KEKRPSVFGMTASPVNLKGVSNQIDCAIKIRNLESKLDSTVCTIKDRKELEKHVPMPSEV
VVEYDKAATLWSLHEQIKQMEVEVEEAAKSSSRRSKWQLMGARDAGAREELRQVYGVSER
TESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLNK
VVALLQCQLSEGAVSDKDGKASIYEEDVANNRSNHDEIEEGELLDSHVVSGGEHVDEIIG
AAVADGKVTPKVQSLVKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFIKSAS
LIGHNNSQDMRTCQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAY
IQSRGRARKPGSDYILMVERGNLSHAAFLRNARNSEETLRKEAVERTDLSHLEDTSRLIS
MDTAPGTVYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHDRPGGPTEY
SCKLQLPCNAPFEDLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEKEK
VEQNDDGDPLPGTARHREFYPEGVANILQGEWILTGRDTFNDSKLLHLYMYTVQCVNLGS
SKDPFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTITTKASLVFRGLCHITESQLVSLK
SFHVRLMSIVLDVDVEPTTTPWDPAKAYLFVPVVGDKSEDPVKEIDWDMVKRIIQTDVWT
NPLQRARPDVYLGTNERALGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKAS
GLVPDRGAVELQRHPDLPKGKLLMADTSMAAEDLVGRIVTAAHSGKRFYVDSIRYDMTAE
NSFPRKEGYLGPLEYSSYADYYKQKYGVELVYKHQPLIRGRGVSYCKNLLSPRFEHAESH
EDESEETLDKTYYVYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKHMINYP
VPSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMV
SNMVLYQYALSKKLQSYIQADRFAPSRWAAPGVLPVYDEDTKDGESSFFDQDKSSSDGIS
EMDHHLDVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKTAANHLMRW
IGIKVEFDADEVECGTKRSNLPESILRSVDFDALEGALNIKFEDRGLLVEAITHASRPSC
GVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHI
HLRHGSSALEKQIRDFVKEVQDEVLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGR
DTAVVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRNGNLATVEVFIDG
VQIGVAQNPQKKMAQKLAARNALAVLKEKEMDEAKEKIEDNGKKKKNGNQTFTRQTLNDI
CLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVL
LLELLNKLYS
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgagactagggttccgggaagttttagcagcgagccaacatgttcactgggg
gtttcttctttctggcttgatgcctgtgaggatatctcctgcgacatcatcaatgatttt
gtggatttccacgcgtctattgcccccggatcctcagctgaacacacttccgatcaacag
aacctggccaacgatttttttggtggaattgatcacattcttgacagtatcaagaacggg
ggaagcctctctccggtaacttgtaatggcgatcgtgattgcaccgtgggggaaggcttt
ttcattgagaatgaggcatctggggttcgtggtatgccggttgatagctcaactgtgcag
tccaatggtgtacagatagaaattcttcaatgtaatgggctgagcaaggataatcttgat
aatggtcgtcatatctgcgagcgctatgaatctgatgatgggttccagcaaccaaatcga
tatgaagggctcagagttgttgaaatccctaggagaaatggaattcaaaaacatgagggg
agtaatgatgtgccgttgagagattggggttgtgataatgaggagagaagcaataagaga
cctcgtattagcaatggcaacaatgagaggcattatgcaaacaggggacagtgtccatct
agggatagagaaaagtttcacactaggaagaggttgcgtgaccgagacgagataggtaga
agggaaaaaggttattttaggaggagagagcattattgtacaagtggaagggattcaaga
gatagggatttgggggagcgggaacaaaaaggttattgggagagggacaaatcagggtca
aatgacatggtttttcactcagggatgtgggaagcggatcgtaacagagaaacaatgact
gataatgacaaaaacctggaattccagggaactgcggagaaaagttccgaggagattaaa
gaaaaaaatcctgaggaacaagctcgtcagtatcagttggatgttcttgaacaagctaag
aagaaaaatactattgcttttctcgaaactggtgctgggaagacacttattgctgttctt
ctcattaaaagtatttataatgatttacaaactcgaaacaagaagatgcttgctgtattt
ttagttcccaaagttccacttgtctatcagcaagctgaggttatacgtgagagaactggc
tatcaagtaggtcattactgtggtgaaatgggtcaagatttttgggatgctagaaggtgg
cagcgtgaatttgaaaccaaacaggttctggttatgacggcacagatactgttgaacatt
ttgaggcacagcataataaaaatggaagcaatcaatctgctgattttggatgagtgccat
catgctgttaagaagcacccctattccctagttatgtctgagttttatcataccacacca
aaggagaagagaccatctgtatttggaatgactgcttcgcctgttaatttaaagggtgtt
tcgaaccaaatagactgtgcaattaagatccgtaaccttgaaagtaaattagattccaca
gtctgcacaataaaagaccgcaaggagttggaaaaacatgttccaatgccatcggaagtt
gttgtggagtatgacaaagctgccactttgtggtcccttcatgaacagataaagcaaatg
gaagtggaagttgaggaagctgcaaaatcaagttctaggaggagtaaatggcaacttatg
ggagctagggatgctggtgctagggaagagctgcgccaagtttatggtgtttctgagaga
acagaaagtgatggtgctgctaatctaatacagaagttgagagcgatcaattatgcactt
ggggagctgggtcagtggtgtgcttacaaggttgcacagtcctttttgacagctttacag
aatgatgagagggctaattatcaactggacgtcaagtttcaggaatcctatttgaacaaa
gttgtcgctctcttacaatgccagctatcagaaggagctgtttctgacaaagatggtaaa
gcttcaatttatgaggaagatgtcgctaataacagatcaaatcatgatgagatcgaggag
ggggaacttcttgacagccacgttgtctccggtggggagcatgtagatgagataatagga
gctgctgtggctgatggaaaagtgactccgaaggtgcaatcactcgttaaaatcctgctc
aagtatcaacacactgaagattttcgtgccataatctttgttgagagggttgtgtctgcc
ttagttcttccaaaggtctttgcagagcttccgtctctaagttttataaaaagtgcaagc
ttgattggtcacaacaatagtcaagatatgcggacatgtcaaatgcaggacactatatcc
aaattccgggatggtcgtgtgacactattagttgctactagtgttgctgaagaaggactt
gatattcgacaatgtaatgttgtgatgcgcttcgaccttgcaaaaacagtcttggcatat
attcaatctagaggtcgtgccagaaagccgggttcagattatattttgatggtcgagagg
ggaaatttgtctcatgcagcatttttaaggaatgctagaaatagcgaggagaccctgcgt
aaagaagcagtggagagaactgaccttagtcatcttgaggatacttcaaggttgatttcc
atggacacagcaccaggtactgtgtatcaagttgagtcaactggtgctgtcgttagctta
aattctgctgttggtcttgtccatttctactgctcgcagctgcctagtgacaggtattcc
attcttcgacctgagtttgtgatggtgaggcacgatagaccaggtggtccaactgagtac
tcttgcaagcttcaacttccttgtaatgcaccatttgaggatctggaaggtccaatttgc
agctcaatgcgcctcgcacaacaggctgtttgtttggctgcttgcaaaaagctccatgaa
atgggagcatttactgacatgctcttgccagacaaaggaagcggagaggagaaggaaaag
gttgaacagaatgatgatggagatccacttcctggtactgctaggcacagagagttttat
cctgaaggtgtagctaatattctccagggagaatggatattaactgggagagatactttc
aatgattccaaattgctccatctttatatgtacactgttcagtgtgtcaaccttggctct
tctaaagatccgttcttgactcaagtttccaattttgcagtactttttggcaatgagctg
gatgcagaggtgttatcgatgtcgatggatctttttattgctcgaactatcactaccaag
gcatctcttgtcttcaggggtttatgtcatattactgaaagccagttggtatctctcaag
agctttcatgtaagattaatgagcattgtgctggacgtggatgtggaacctactaccact
ccttgggatcctgcaaaggcttatttattcgtccctgttgttggtgataagtctgaagat
ccagtgaaagaaattgattgggatatggttaaaagaataattcagacggatgtctggacc
aatccccttcagcgtgctcggccagatgtctatcttggcacaaatgagcgagcattaggt
ggggacagaagggaatatggatttggaaaactgcgtcatggtatggctttcggacagaaa
tctcatcctacctatggtataagaggagcagtggcacagtttgatgttgtgaaggcatct
ggtctggtacctgaccgtggggctgttgaattgcaaaggcacccagatctacccaaaggc
aaacttttgatggctgatacttctatggctgcagaagatttggtagggaggattgtaacg
gctgctcactcagggaaaaggttttacgtggattcgatacgttatgatatgactgcagag
aattcctttccgaggaaggaagggtatcttggtcccctggaatacagctcatatgctgat
tattacaagcaaaagtatggagttgaattagtatataagcatcagcctttaataagagga
cgtggtgtctcgtattgcaagaatctcctgtcccctcggttcgaacatgcggaaagtcac
gaagatgaatctgaagaaactctggacaaaacatactacgtttatctcccccctgagctg
tgtctggtacatccactgcctggatcactcgttcgtggtgcacagagattaccatctatc
atgagaagagttgaaagcatgctgcttgctattcagttaaaacatatgataaactaccct
gttccttcctctaagatcttggaagctttaactgctgcctcatgccaggagacgttctgc
tatgaaagagcagaactgctgggagatgcttatctgaaatgggtggttagtcgattcctt
tttcttaaataccctagaaaacatgagggccagcttactagaatgaggcaacaaatggtc
agtaacatggtcttgtatcaatatgcattgagcaaaaaacttcaatcttatatacaagcc
gatcgttttgctccatctcgatgggctgctcctggtgtgcttcccgtctatgatgaggat
acgaaggatggggaatcatccttctttgatcaggacaaatcaagttctgatggtattagc
gagatggatcaccatcttgatgtttttgaagatggtgaggtggaggacagagaggtggaa
agtgactctagttcttacagagtcctttctagcaaaactcttgcagatgttgtggaagcg
ctcattggagtttattatgttgaagggggaaagactgctgcaaatcaccttatgagatgg
atagggattaaggtcgagtttgatgctgatgaggttgagtgtggaacaaaacgatcaaac
cttccagagagcatacttcgaagtgttgattttgatgcattggagggtgccctgaacatc
aagtttgaagatcgtggtttgctggtagaggctatcactcatgcttcccgaccatcttgt
ggcgtttcatgttatcagcggttggaatttgttggtgatgcagtcttagatcatctgatt
actaggcacttgttctttacatacacagatctacccccaggccgcttaactgacttgcga
gcagctgctgtaaacaatgaaaattttgcacgagttgctgttaaacacaatctccatatt
catcttaggcatggctcaagcgctcttgaaaagcagattagggacttcgtgaaggaagtt
caagatgaagtactgaaacctggtttcaactcctttggcttgggagactgtaaagctcca
aaagttcttggtgatattgttgaatccattgctggtgctatttttcttgatagtggacgt
gacactgctgttgtctggagggtatttcaaccactgttgcatccaatggttactcctgag
acacttccaatgcatccggttcgtgagctgcaagagcgatgccaacaacaggcagaaggt
ctggagtacaaagcaactcgcaatggcaatttagctacagttgaagttttcattgatggg
gtccagattggagttgctcagaatcctcagaagaagatggcacagaaactagctgcgagg
aatgcacttgctgttttaaaggagaaggaaatggatgaagccaaggaaaaaattgaagac
aatgggaaaaagaagaagaatggcaatcaaacattcactagacagaccttgaatgatatc
tgtctacgtagaaattggcccatgcctttctataggtgtgtgaatgagggtggccctgca
catgcaaagaggtttacctttgccgtgcgggtgaatactacagacaagggatggaccgat
gaatgcgtgggagagcctatgcctagtgtcaaaaaggccaaggactctgctgcagttctg
ttgctggagctactgaataaattgtactcatga
DBGET
integrated database retrieval system
