Benincasa hispida (wax gourd): 120075694
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Entry
120075694 CDS
T07258
Name
(RefSeq) N-glycosylase/DNA lyase OGG1 isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120075694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120075694
Enzymes [BR:
bhj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
120075694
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120075694
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
RecR_HhH
HHH
Motif
Other DBs
NCBI-GeneID:
120075694
NCBI-ProteinID:
XP_038885235
LinkDB
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Position
4:47385502..47388310
Genome browser
AA seq
414 aa
AA seq
DB search
MPSLSFNFKPLLMTKRLRPTPPSTPSAKPPPLPSPPSPPTPQLSHSKPTTVSVHYSSKNR
NKTLTPQSSSSFNWVSLNLTKSELALPLTFPTGQTFRWKQTSPLQFTGVVGSHLISLNHL
PNSDVSYCLHSCSTSSSSAAARLALLDFLNAGISLSSIWEVFLAADPRFDVLARHLEGAR
VLRQDPLECLIQFLCSSNNNIGRITKMVDYISSLGNYLGNIGGFDFYEFPSLERLSLVSE
AELREAGFGYRAKYIIGAVNALKAKPGGGAEWLLSLRDLDLEEVIEALSTLPGVGPKVAA
CVALFSLDQHHAIPVDTHVWQLIEKFLLAWDEKIATRYLVPELAGARLTPKLCNRVAEAF
VSKYGKYAGWAQTLLFVADLPQQKALLPANLENAKRKRSTKHQKDKAHTGNVDQ
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgccttcattgtcattcaatttcaaaccccttctaatgacgaagaggctcagacccact
ccaccctccactccctccgccaagccaccgccgttgccatcgccgccgtctcctcccacc
cctcagctctcccattcaaaaccaaccaccgtctccgtccactactcttccaaaaaccga
aacaaaaccctaaccccacaatcctcatcatccttcaattgggtctctctaaatctcacc
aaatcagaactcgctctgcctctcactttccccaccggccaaaccttccgctggaaacaa
actagcccccttcagttcaccggcgtcgttggctctcatcttatctctctcaaccatctt
ccaaacagcgacgtttcatattgccttcactcttgttctacatcctcctcctctgccgct
gccagattggccttgctcgatttccttaacgccggcatctccctgagttccatttgggag
gtcttcttggcggctgatccgagattcgatgtgttggctcgccatttggagggggctcga
gttctcaggcaagacccactcgaatgtttgattcagtttttgtgttcttccaataataat
attgggagaatcaccaaaatggtggattacatctcatcacttgggaattatttgggtaat
attggaggttttgatttctatgaattcccatctttggagaggctgtccttggtctctgag
gccgagcttagagaggcaggctttggttacagggctaagtatataattggcgctgtgaat
gcactaaaagccaaacctggtggaggtgcagaatggcttctgtcccttcgtgatttggat
cttgaagaggtgattgaagccctttcaacattaccgggcgtgggtccaaaggtagcagct
tgtgttgctctcttctctctcgaccagcaccacgccattcctgtcgacacacacgtctgg
cagttgattgaaaagtttcttcttgcgtgggatgaaaagattgctacaaggtaccttgtc
ccagagcttgctggtgcacgtctaacgccaaagctttgcaaccgtgtggctgaggcattt
gtcagcaagtatggaaaatatgctggttgggctcaaactctgcttttcgttgctgatttg
cctcaacagaaggccctcttacctgcaaatcttgagaatgccaaaaggaaaagatctaca
aagcaccagaaagataaggcacatacgggtaatgtagatcaatga
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