Benincasa hispida (wax gourd): 120075711
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Entry
120075711 CDS
T07258
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03013
Nucleocytoplasmic transport
bhj03015
mRNA surveillance pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120075711
09122 Translation
03013 Nucleocytoplasmic transport
120075711
03015 mRNA surveillance pathway
120075711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120075711
03041 Spliceosome [BR:
bhj03041
]
120075711
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120075711
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120075711
Spliceosome [BR:
bhj03041
]
Complex C
Other components
EJC/TREX
120075711
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120075711
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
120075711
NCBI-ProteinID:
XP_038885261
LinkDB
All DBs
Position
4:24190885..24196091
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
SRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagggacaacgaatacgaggaagagctcctcgactacgaagaagaggaa
gagaaggcccccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gttggaattcatagttcgggattcagagacttcctattgaagccagagcttctccgtgct
attgttgactctggatttgagcacccatctgaagttcaacatgaatgtattccccaagct
atcctcggcatggatgttatttgtcaagctaaatctggtatgggtaaaactgctgttttt
gttctgtcaacactgcagcagattgaccctgttgctggtcaagtttctgccctagttctg
tgccatactagggagcttgcataccagatctgtcatgagttcgaaaggttcagcacttat
cttccggatctgaaggttgctgtcttctatggtggagtgaatattaaaattcacaaagat
cttctgaaaaatgaatgtcctcatattgttgttggaacacccggaaggatactggcattg
tcaagagataaagacctatccctgaagaacgtccggcattttatcttggatgagtgtgat
aagatgcttgagtcacttgatatgcggagggatgtacaggagattttcaagatgactcct
cacgacaaacaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtagacgacgaggcaaaactgacattg
catggtcttgtccagcactacatcaaattgagcgagatggagaagaatcgaaagttgaat
gacctccttgatgcattggacttcaatcaagtggttatttttgttaaaagtgttaatagg
gcagctgagctggataagttgttggtggagtgtaattttccctcgatatgcatccactct
ggcatgtctcaggaagagaggttgactcgatacaagggttttaaggaaggacataagcgg
attcttgtggctacagatttggttggtcgtggaattgacattgaacgtgtgaacattgtt
atcaattatgatatgccagattctgctgatacttatctgcacagggttggcagagctggt
agatttggcaccaaagggcttgctattactttcgtatcatctgcagctgattctgatgtc
ctcaataatgttcaagaaaggtttgaagtcgatattaaggagcttccagagcagattgat
acatccacatacatgccatcatag
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