Benincasa hispida (wax gourd): 120075847
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Entry
120075847 CDS
T07258
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120075847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120075847
Spliceosome [BR:
bhj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120075847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
PRP4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_Nup120_160
WD40_like
Motif
Other DBs
NCBI-GeneID:
120075847
NCBI-ProteinID:
XP_038885479
LinkDB
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Position
4:31330538..31336278
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AA seq
569 aa
AA seq
DB search
MEVDDQNPASTAAESPETLPGGENEDLDNPAEPIQPAATSVIPPSVVPSIAPIPPPIIRP
LAPLPSRPPHFRPPVTQNGEMRTSDSDSEHDELAPSRTAGGSTAEYEVSEESRQVRERQE
KAMQEFLMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRSIMARLDAEG
QLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLDARIDIAKYSILRAASRLE
RAKRKRDDPDEDVEAEMDWALRQAGSLVLDCSEIGDDRPLSGCSFSSDGKFLATSSLSGV
AKLWSMPQVRKVSNFKGHTERVTDVIFSPVNECLATASADRTARLWSAEGSLLKTFEGHL
DRLARIAFHPSGKYLGTTSFDKTWRLWDVETGVELLLQEGHSRSVYGIAFHHDGSLVSSC
GLDALARVWDLRTGRSVLALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLY
IIPAHSNLVSQVKYEPQEGYFLVTASFDMTAKIWSARDFKPVKTLSGHEAKVTSLDIISD
GQCIATVSHDRTIKLWSVNSKDEQTMDID
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgatgatcaaaaccctgcatcaactgctgcggaatctcctgaaacccttcct
ggaggtgaaaatgaggatcttgataatccagcagaaccaattcaacctgcagctacatca
gttattccaccttcagttgttccttccattgctcctatccctcctccaattatccgtcca
ttggcccctcttccgagccgacctccccactttaggccccctgtaacacaaaatggtgag
atgagaacaagtgactcagactcggaacatgatgaattggctccttcccgaacagctgga
ggttcaactgcagaatatgaagtatcggaagagagcagacaggtaagggagcgtcaggaa
aaagccatgcaggaatttctgatgaagcgtcgtgcttctgctctagcagtgcctactaat
gacatggctgttcgagctcgccttcgtcgtcttggtgaacccataactctttttggagaa
agagaaatggaaagacgggacaggttacggtcaataatggcacgattggatgctgaaggg
caattagaaaagctgatgaaagttcacgaggaagaggaggctgcagctactggtggaact
gaggaggctgaggaggaagtgcttcagtatcccttttatactgagggatccaaagctctc
ttggatgcaagaattgatattgcaaagtattccatcctaagagcagcttcacgtcttgaa
cgtgcaaagaggaaaagggatgacccagatgaagatgtggaagctgaaatggattgggcc
ctgaggcaggctggaagtttggtcctggactgcagtgagataggagatgatcgaccactt
tctggttgttctttctcatctgatggaaaattccttgccaccagttcgttaagtggagtt
gccaaattatggagcatgcctcaagtaaggaaggtttccaactttaagggacacacagag
cgtgttactgatgtaatattttctccagtgaatgagtgtttagcaactgcctctgctgac
cgaactgcaaggttgtggtctgctgaaggatctctccttaaaacattcgagggccatctg
gatcgccttgcacgaattgccttccacccatcaggcaagtacttgggtacaactagcttt
gacaagacgtggagattatgggacgttgaaactggtgtagagttacttcttcaagaaggt
catagtagaagtgtctatggaatagctttccaccatgatggatcattggtatcatcttgt
ggacttgatgcacttgctcgtgtttgggatcttcgaacgggtagaagtgttcttgcctta
gaaggccacgtcaagccggtccttggagtcagtttttcacccaatggttatcatttagct
actggtggcgaagataacacttgtaggatatgggatttaaggaagaaaaaatctctttac
ataatacctgcacattcaaacctagtttcacaggtgaaatatgagcctcaagaggggtac
ttcttggttactgcatcatttgatatgacagcaaagatttggtctgctcgagattttaag
cctgtgaagacactctctggtcacgaagcaaaagttacatctttggatataatttcagat
ggacaatgtattgcaactgtctcacatgatcggaccataaagctctggtctgtcaatagt
aaagatgaacaaactatggacattgattga
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