Benincasa hispida (wax gourd): 120075853
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Entry
120075853 CDS
T07258
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120075853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120075853
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120075853
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120075853
RNA polymerase I system
120075853
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120075853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW6_SPT51-2
KOW2_Spt5
Spt5-NGN
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
PSP1
Motif
Other DBs
NCBI-GeneID:
120075853
NCBI-ProteinID:
XP_038885489
LinkDB
All DBs
Position
4:complement(44731632..44742202)
Genome browser
AA seq
1040 aa
AA seq
DB search
MPRRRDDDDDDIDADEEEYEEEMEQPLDEEEEEEEDRSSRKRRRSDFIDDVAEEDEDEEE
EEEDEEEEDFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEDEDEGEDDFIVDNVADIPDD
DDNRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPK
LWMVKCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNFIYIEADKEAHVREACKG
LRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRV
TVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFE
NIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKG
HFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHV
KVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHD
LVLLDNMSFGVIIRVETEAFQILKGTPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISS
KDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICVKSQSCVVVGGSRTNGNRN
GNSYSRFAGLATPPRFPQSPKRFPRGGPPNDNGGRHRGGRGHHDGLVGSTVKVRQGPYKG
YRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAVSTPHRDASRYGMGSETPMHPSRT
PLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNWEDGNPATWGASPQYQPG
SPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSAS
YLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYMPDILVNYRRSGDDPIMGVIREVLPD
GSCRIGLGSSGNGETVTAPSSEVEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKV
DDTLDVKILDLVILAKLAQP
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtcgcagggacgacgatgacgacgacattgacgccgatgaagaagagtatgag
gaggagatggaacagcctctcgacgaggaggaggaggaggaggaagatcgttcgagtagg
aagcgtcggagatcagatttcatagacgacgttgcggaggaagatgaggacgaagaggaa
gaagaagaggatgaggaggaggaggattttggtggcggtggtcggaggcggcgtgccaag
aggcctagcggttctcagtttttggatattgaggctgaggtcgatagcgatgatgatgaa
gatgaggatgaaggagaggacgatttcatagttgataatgtagctgatatacccgatgac
gatgataatagaaggatgcatcgccgcccgttgctaccacgggaggatgaacaagaggat
gttgaagcacttgaaagaaggattcaagcgagatatgcaaggtcaaatcatatggaatat
gacgaggagacgacagaagtggagcagcaagcccttttaccttctgtaagggatccaaaa
ttgtggatggttaaatgcgcgattggccgtgaacgggaggctgctgtttgtctaatgcaa
aaatgcatcgatagagggcctgaaatgcaaataagatctgcggttgctcttgaccatttg
aagaactttatatatattgaggctgacaaagaagcccatgttagagaggcttgtaaaggt
ctacgcaacatatatgctcaaaaaataacgcttgttccaattaaagagatgactgatgtt
ctctctgttgaaagcaaagcaattgatctttctagagatacatgggttaggatgaagatt
gggacatataagggggatcttgccaaggtggtggatgttgataatgtgcgacagagggtt
actgtgaaactgattccacggatagacctacaggctcttgcaaataaattggaagggaga
gaagttgctaagaagaaggcatttgttcctccacctcgttttatgaatattgatgaagct
agagagttgcatatccgtgtagagcgcagacgtgatcctattactggagaatactttgag
aatattggtggcatgtttttcaaggatggtttcttgtataaaacagtgtccatgaagtca
ataagtgcccaaaacataaagccgacttttgatgaacttgaaaaatttcgaaagcctgga
gaaaatggagatggggatattgctagtttgtctaccttgtttgctaaccgaaagaaaggg
cactttatgaagggtgatgctgtcattgttgttaagggggatctcaagaatttgaaagga
tgggtggagaaagtagaggaggagaatgtccacatcagaccagaaatgaagggccttccc
aaaactcttgctgtgaatgaaagagagctttgcaagtactttgagcctgggaatcatgta
aaagttgtatcgggcactcaggagggggctactggtatggttgtgaaggtggatcagcat
gtgcttattatactatctgatacaaccaaggaacatattcgggtatttgctgatgatgtt
gttgagagctccgaggtaacaactggtgtgacaagaattggggattatgaacttcatgat
cttgtgttactggataatatgagctttggcgtaattattcgagtagaaactgaggctttt
cagattcttaaaggtactcctgataggcctgaggttgatattgtgaagttgagggaaata
aaaagtaagatcgacaagaaaattagcgttcaagatcggttcaataacacaatttcctcc
aaggatgtagtgaggattcttgaaggtccttgtaagggaaaacaaggtccggtggagcac
atatacagaggaatcctgtttatttatgatcgccatcacttggaacatgcaggctttata
tgtgttaaatcacagtcttgtgttgttgtgggtggatctcgaactaatggaaatagaaat
ggtaattcatactctaggtttgctggccttgcgaccccacctcgttttcctcagtcacct
aagagatttccccgaggaggcccccccaacgataatggaggaagacatagaggtgggaga
gggcatcatgatgggttggttggatcaaccgtaaaagttcgacagggaccttacaagggt
taccgtgggcgtgtcgttgaaataaaaggccaactggttcgtgtggagcttgaatctcaa
atgaaagttgtcacagttgaccgcaatttcatctcagataatgtggccgtttcaaccccc
catcgtgatgcatctagatatggtatgggaagtgaaactcccatgcatccttctcgaact
cccctgcatccatacatgaccccgatgagagatattggaacaacaccaattcatgatggc
atgagaacacctatgcgagatcgagcatggaatccctatgcacccatgagtccgtcaagg
gacaactgggaggacgggaaccctgcaacttggggagcaagtccacagtatcagccagga
agccctccttcacgaacatacgaagctccaactcctggttctggttgggcaaacactcct
ggtggcagctacagtgatgctggtaccccccgtgatagtggttcagcatatgcaaatgct
ccgagcccatacttgccttcaactcctggtggacagcccatgacaccaaattcagcctcc
tatcttcctggcactcctggcgggcaaccaatgacaccaggcacaggtggtctggatatg
atgtctcctgttataggtggtgataccgaaggaccgtggtacatgccagacatattggtc
aattaccggaggtcaggagatgatcccatcatgggagtaatccgtgaggtgcttccggat
ggatcgtgtaggatagggcttggatcaagtggaaatggtgaaacggtaacagccccttct
agcgaagtagaagtgattgttcctaggaagtcagacaagatcaagataatgggcggtgca
ctccgtggtgccactggcaagttgatcggtgtagacggcactgatggaattgtgaaggta
gacgacactcttgatgttaagattttggatttagttattcttgctaaacttgctcaaccg
taa
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