Benincasa hispida (wax gourd): 120075862
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Entry
120075862 CDS
T07258
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03420
Nucleotide excision repair
bhj04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120075862
09124 Replication and repair
03420 Nucleotide excision repair
120075862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bhj04121
]
120075862
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120075862
Ubiquitin system [BR:
bhj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120075862
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
120075862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SPT8
NBCH_WD40
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_LRRK2
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
120075862
NCBI-ProteinID:
XP_038885499
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All DBs
Position
4:complement(10803157..10808606)
Genome browser
AA seq
473 aa
AA seq
DB search
MWKDIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIISPHRGSVNSLQVDLTEGRYLL
SGASDASAAVFDIQRATHSEGLIAKYQCIFAVDKQHEHGHKYAISSAIWYPIDTGLFVTG
SYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAF
SHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPI
SGWTANKLSTSKSLLASQGSNMKSRVPHKKLANGNATKPSSTGKLPAKGSTRQRLHPGLL
SSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPL
QLATSQDSSLVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQ
ILVWSPSRNSTELWTRRIGNRLQTRITGATDCRQQGNLVSMLMPSIRLCSPCT
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggatattagagatagagaagcgggaaaactccgcccaaattctttcgcaaat
cgtgttaaatccgatcgaaccagctctctgcaactttccaatcacaaggatattatctct
ccccatagaggttccgtcaactcacttcaggttgatttgacagaggggagatatttgtta
tctggagcatcagatgcatcagctgctgtttttgatattcaacgtgcaactcattccgag
ggtcttattgcaaagtaccaatgcatttttgcagttgataagcagcatgaacatggacat
aaatatgcaatatcctcggccatatggtatcccattgatactggattgtttgtcaccggc
tcatatgatcatcatattaatgtctgggatacaaatacaactcaggtggtggtgaatttt
aaattgcctggaaaagtttataggacagccatgtcctctttggcaacatcacacatgctg
attgctgctgggacagaagatgttcaagttcgcctttgtgatatttcttctggagcattt
tctcacacattatctgggcatcgtgatggtgtaatgagtgtagaatggtcagcttctagc
gagtgggttttgattactggaggatgtgatggggctatacgcttttgggacatcagacga
gctggatgctttcgtgttctagatcagtctcaatcccagcttgggagacgtcctcccatt
tcaggatggactgcaaataagctgtcaacatctaagtccctcttggccagccagggttca
aatatgaaatctcgtgtacctcataagaaactagccaatggaaatgcaacaaagccatca
tctacaggtaaactgccagctaagggatccacaaggcagagactacacccagggcttttg
tccagtcaggatcgagcagtctctcactatggtgctgtcactggattaaaagtaactgga
gatggcatgtaccttctcagtgcaggttctgattcaaggttgaaattatgggatgttgaa
tccgggtgcaatacactcgtgaattatgaaaccatgcggttacagaccaataaaccattg
cagttagccacatctcaggattcatcccttgtatttgccccatgcatggcgactgttaaa
gcatttgatatgtggacagggaagacatccctgacattcagcggccactatgaaggtgtg
aactgttgctggtataatttcccagatcaggaactgtacactggtggcaacgataggcaa
attctcgtctggtcaccatcccgaaactctaccgaactgtggactcgcaggattgggaat
cgactgcagacaaggataactggagcgactgattgtcgtcaacaaggaaatttggtttca
atgctgatgccatccatcagactctgctcaccatgtacataa
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