Benincasa hispida (wax gourd): 120075903
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Entry
120075903 CDS
T07258
Name
(RefSeq) endoribonuclease Dicer homolog 3 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bhj03036
]
120075903
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120075903
microRNA pathway
RISC loading complex
120075903
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
DND1_DSRM
SNF2-rel_dom
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120075903
NCBI-ProteinID:
XP_038885573
LinkDB
All DBs
Position
4:38303288..38337898
Genome browser
AA seq
1643 aa
AA seq
DB search
MHEPEEENRDGAHKRKFSDLEPSAASDQSNFNQTMDEGFIPRRYQREVFEVGMRRNTIAV
LETGSGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQQFNVIKVHTDFEVAEYY
GAMGVDDWNMNCWDKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIIDECHRVTGNHP
YTKIMKEFYHKSDNKPKIFGMTASPVIRKGVSSSFDCECQIADLESILDSQIYAIEDKKE
VEIYVPSAKEICIFYEPAKPQTVELKAKIEALWSEFDALLSNSKGAMQGHYKDVDSKLKA
LKKRLSNDHLKITYCLDELGVMCAYEAIKVLLENVNFPNEEPEVYRESFLQYKRFLEEAL
LVIGESFPLGNENIPNFGFDFWKAIDSGYISPKLFELLQLFESFGVSRQVLCLIFVERII
AANVIERIVKKVANLSHFTVSYVTGCNASVGALAPKVQKETLKLFCHGKLNLLFSTDVVE
EGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYILLLERGNLKQRAQLCDIIRSDR
SMTDAAMSRDPDACILKPFSIVETDCYIVEATGASVTADSSVGLIYQYCKKLPGDKYFSP
KPIFQLSYGEGSYECQLTLPPTAPFQTIVGPSTRNSNLSKQLVCLEACKRLHQMGSLNDH
LLPSIEEISEFDVGLKSNASTSRAGSTKRKELHGRTAIRALSGTWGEQVEGATFQAYKFD
FSCSVMYELYSGFVLLIESKLDDDVGNFELELYLLSKTVKAFVSFGGEVHLDAEQITKAK
CFQELFFNGLFGRLFIGSKSTGKKRDFLLQKDTKPFWISSNMYLLLPINLPDDSTHDLWK
IHWRAIDSCVSVVEFLKKNSSLDAERNCGAGATSDSSPSRNNSTETGSKAASLIHFANCV
LDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGNSDKAPPDYITFADYFNKRYGIS
LSFPKQPLLRLKQSHNPHNLLVNFKDEGNTSDKLLSGPAFRKPQMHVHMPPELVLSMDVP
KGVLKSSYLLPSLMHRFESLMLASQLRKEINYHSNSLCISSSLILEALTTLGSCENFSLE
RLELLGDSVLKYAVSCHLFLKFPEKHEGHLSSRRQQVICNATLHALGTKCMLQGYIRDSA
FDPRRWVAPGQGTNRPVPCKCGVDTVEVPLDDKFCTEDPKVVLGKCCDKGHRWVVSKTIA
DCAEALIGAYYVDGGIIAALHVMKWLGIDADLDVALVADAITSASLRSCPLEDTEIATLE
SKIGYDFSVKGLLLEAITHTSDQELGVNYCYQRLEFLGDSVLDLLITWHYYQNHSEIDPG
ELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQVTEYVKYLSESHDTGKSLHGNK
GPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPFVTPDKLELPPLRELIELCDSLG
YFIKDKCTRKGEIFHAELRLQLQDALLIGEGYERTRKAARGEAAHCLLVQLETRGISYSR
SGSKKRKQNPSHIEAAMVLPSSVNCSTEACDPNLETPVIGPINLKKGGPRSTLFELCKKL
QWPMPTFNTVENKSRVQIEIGEGSEKRKGFNSFLSNVILQIPNVGCIECEGEARADKKSS
LDSASLIMLQELRQRGRVIINDS
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgcatgagcctgaggaggaaaatcgtgatggtgctcacaagagaaaattcagtgacctg
gagcccagtgctgcttctgatcagtccaatttcaaccaaaccatggacgagggctttatt
cctagaaggtatcaaagggaggtttttgaagttgggatgaggaggaacaccatagccgtg
ttggaaacaggatctggaaagactatgatcgcagtgatgcttataaaagaaattggaaaa
gctatgaagtccagtggtgataagaagttcatcattttcttggctccgactgttcatttg
gttcatcagcaatttaacgttattaaagttcatactgattttgaagtggcggagtattat
ggtgccatgggggtcgatgattggaatatgaactgctgggacaaggaaacaagcgaacgt
gatgtactcgttatgaccccccaaattcttcttgatgcactgaggaaggcatattttaga
ctgggaaccgtatgcttgatgatcattgatgaatgccatcgtgttactggtaatcaccct
tatacgaaaatcatgaaggaattttatcacaaatctgacaacaaaccaaagatttttgga
atgactgcctcacctgttattagaaaaggtgtttcctcttccttcgattgtgaatgccaa
atagcagaccttgaaagtatcttggattctcagatttatgctattgaagataagaaagaa
gtggagatatatgttccctctgcaaaggaaatttgcatattttatgaaccagctaagcct
caaactgtggagttgaaggcaaagatagaagccctgtggtctgagtttgatgctttattg
tcaaactcaaaaggggcaatgcaaggtcattataaagatgtagacagtaagcttaaggca
ctgaagaaacgactgtccaatgatcatttaaagatcacttattgtcttgacgaacttggt
gttatgtgtgcctatgaggcgattaaagttttattagagaatgtcaattttccaaatgag
gaacctgaggtttatagagaaagctttttgcaatataaacgttttcttgaggaagcatta
ctagtaattggggaatcatttccacttggaaatgagaatattccgaattttggttttgac
ttttggaaagctatagactcgggatacatttctcctaaattgtttgaacttctccaactc
tttgaatcatttggagtatctaggcaggtgctctgtctcatatttgttgaaagaataatt
gccgctaatgttatcgaaagaattgtgaaaaaagtagcaaatttatctcattttacggtt
tcatatgtgacgggatgtaatgcatcagttggtgcactggcaccgaaagtccagaaggag
acattaaagttgttttgtcatggcaagctcaatctattattttccactgatgtagttgag
gagggacttcatgttccaaattgctcatttgtggtacggtttgaccttcctaagactgtt
cgtagttatgtacaatctcgaggtcgtgctcgacagaacaactctcaatatattttgttg
ctggagaggggaaacctgaagcaaagagctcagctatgtgatatcataagaagtgaccga
tcaatgacagatgcagctatgagtagagaccctgatgcatgcattttgaaacctttttca
attgtggagacagattgttacattgtggaggcaactggggcatcggttactgcagattct
agtgttggtctcatatatcaatactgcaaaaagctccctggtgataaatatttcagtccg
aaaccaatctttcaactctcatacggtgaaggatcctacgagtgtcagctaactttacct
cctacagcaccttttcaaaccatagttggtccttcaactaggaattctaatttgtctaag
cagcttgtatgcctggaagcatgtaagaggctacatcaaatgggttcacttaatgaccat
cttctcccctctattgaagagatatcagaatttgatgtgggtctgaaaagcaatgcatcc
acttctagagcaggatcaacaaaaaggaaggaactacacggcagaactgcgattagagct
ttatctggaacttggggagaacaagtcgaaggggccacttttcaggcttataaatttgac
ttctcctgtagtgttatgtacgagctttattctggatttgttcttctgatagaatcaaaa
cttgatgacgacgtgggaaattttgaactcgaactttatctactctcaaagacagttaag
gcttttgtgtcttttggcggggaggttcatttggatgctgaacagataacaaaagcaaag
tgctttcaggagcttttcttcaacggattgtttgggagactgtttattgggtcaaaatca
actggaaaaaagagggattttttacttcagaaagatacaaaacctttttggatttcatca
aacatgtatctgcttctaccaatcaatttgccggatgattcaactcatgatttatggaaa
atacattggagagcaattgattcctgtgtttcggtggtagagtttttgaagaaaaattca
tctttggatgctgaaagaaattgtggtgctggtgctacatcagattcatcgccttctaga
aacaactctactgaaactggaagcaaagctgcaagtttaattcactttgcaaattgtgtt
ctagatgttcattctttaaaggacagggtggtattggctattcatactggaaggatctac
tcaatcgttgaagttgtgagtaatacatctgccgagagccctttcgatgggaacagtgac
aaagcaccacctgactacattacctttgcggactacttcaacaaaaggtacgggatttca
ctaagttttccgaaacagcctctgttgcgtttaaagcaaagtcataatcctcacaattta
cttgtcaactttaaggatgaaggtaatactagcgataagttgctatctggccctgcattc
agaaagccacaaatgcatgtccatatgcctcctgaacttgtgcttagcatggatgtccca
aagggggttttgaagtcttcatacctgctaccatctttgatgcaccgctttgaatctttg
atgttagccagccagcttaggaaggagattaattatcattcaaacagcctctgtatatca
agctctttgatattggaagcacttacaacccttggaagttgtgagaatttttccttagag
cggttggaattgcttggtgattcagtgttgaagtatgctgtgagctgccacctctttctc
aagttccctgaaaaacacgaagggcacttatcttctaggcgccaacaggttatctgtaat
gcaactttacatgctttgggaacaaagtgcatgttacagggatacatacgtgattctgca
tttgatccacgtcggtgggtggcaccaggacaaggtaccaatcgtcctgttccttgtaaa
tgtggagtggatacagtagaagttcctttggatgacaagttctgcactgaagatcccaaa
gttgttttgggtaagtgctgtgataagggacacaggtgggtggtttcaaaaactatagct
gactgtgccgaagcccttataggggcctattatgttgatggtggaatcattgctgcactc
cacgtgatgaagtggcttggaattgatgctgatcttgacgtagcattagttgctgatgca
attacatctgcatctctaagatcctgccctttggaagatactgagattgcaaccttagag
tcaaaaattggatatgatttttccgtcaaaggattgttgctggaggctataacacacaca
tctgatcaagaacttggtgttaattactgttaccagaggcttgaatttcttggtgactca
gtgttagacttgctcattacttggcattattatcagaaccattcagaaattgacccaggg
gagttgaccgatttacgttcagcttctgttaataatgaaaattttgctcaagtggctgtg
agacggaatcttcagcaacatcttcaacattgttctgggcttctgatgagtcaagttact
gaatatgtgaagtatttgtccgagtctcatgatactggaaagtcactgcatggcaataaa
ggccccaaggttcttggtgatatggtggaaagtattgcaggtgccatactgattgacaca
aagcttaatcttgacgaagtgtggaaaatatataagccactattgactccatttgttacc
cctgataaacttgaacttccaccactgcgagaactaattgaattatgtgattctcttggg
tatttcatcaaagataaatgtactaggaagggagaaatttttcatgcagaacttagatta
cagttgcaagacgccctattgataggtgaaggatatgaacgaaccagaaaagccgcaaga
ggggaagctgctcattgcttattagttcaacttgagaccagaggaatttcttactctcgt
tctggctctaagaagagaaaacaaaatcccagtcatatcgaggctgctatggttctcccg
tcatctgtcaactgttctacagaagcctgtgatcccaacttggagacccctgttattgga
ccaatcaacttaaagaaaggaggaccacggagtacgctgtttgaactatgcaagaaactg
cagtggccaatgccaactttcaatacagtagaaaataaatcaagggtccaaatcgaaatt
ggcgaaggctcagagaagagaaaaggatttaacagttttttgtcaaatgttattttgcaa
atacccaatgttggctgtatcgaatgtgaaggtgaagctcgagcagataagaagagctcg
cttgattcggcatctctcatcatgcttcaggaactccgacaacgaggaagagtcattatt
aacgactcatga
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