Benincasa hispida (wax gourd): 120076827
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Entry
120076827 CDS
T07258
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03022
Basal transcription factors
bhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120076827
09124 Replication and repair
03420 Nucleotide excision repair
120076827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120076827
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120076827
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120076827
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120076827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
120076827
NCBI-ProteinID:
XP_038886688
LinkDB
All DBs
Position
4:48450066..48454916
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AA seq
295 aa
AA seq
DB search
MASAPPKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLNNLEEFVISDEQSLKEDPKGGTMSSL
LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA
SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGESPIELDSVSKQKRKTPE
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgctcctccgaagctctatgcagatgatgttagccttttagtggttttactg
gatacgaatccttttttctggagcacatcttctctcccattctccaagtttctgtctcat
gtacttgcttttctgaactccattttagttctgaatcaacttaatgaggttgtggttatt
ggtactggatacgcttcatgcaagtatttatacaactcgtcttcttactcaaatcatggc
cttgaagatggtagaatgcctgcactttgtactcgtttattgaataatttggaggaattc
gtaattagcgatgagcaatccctcaaggaagaccccaaaggagggaccatgtcttcactt
ctttctggatcgctctccatggctttgtgttatatacagaaagttttccgctctggatct
ctccatcctcaacctcgaatcctttgtttgcagggatccccagatggtcctgaacaatat
gttgcaatcatgaatgccatcttttctgctcagcgttcaatggttcctatagattcatgt
tacattggttcacacaattctgcatttcttcagcaggcttcttacataacgggtggagtt
tatctgaagcctcagcaaatggatgggctgtttcaatatctctctactgtttttggcact
gatttgcattcccggaccttcttacagcttccaaagtctgttggtgtggatttccgtgca
tcgtgtttctgccacaaaaaaacaattgatatgggctatgtctgttctgtttgtttatct
atattctgcaagcatcacaagaaatgctctacctgtgggtcagtttttggtgagtcccca
atagaactcgattcagtgtctaaacagaagagaaaaactccagaatga
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