Benincasa hispida (wax gourd): 120077751
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Entry
120077751 CDS
T07258
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
120077751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bhj03036
]
120077751
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120077751
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120077751
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
120077751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
120077751
NCBI-ProteinID:
XP_038887670
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All DBs
Position
5:3815025..3822679
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AA seq
1222 aa
AA seq
DB search
MEEEEDRILLNSLGVTSANPEDIERDLLEKAKKNSENSVEVGAIAEENVCDKLDSTDSPS
ASHVQLYQKLRAVEYEIDAVASTVEPGKKLERNEEHSYVGTDSQEHGREVDGVSASADGL
QHAIAVDRLRSLKKTQQQLKKELSHLNDKHAKTILEIVKDRSKPKRKSKEVKKSVNNGEK
RLKVVSFDEDNDFDAALDAATVGFVETERDELVRKGILTPFHKLKGFERRLQNPGQSSLQ
NPRGSRCEVKTEEEEHDDFASDSVARALQSMSVAAQARPTTKLLDPEALPKLDPPTHPFY
RLKKLAKVPLSAEDKATKKIKCKKPRRPLPDKKYRRRIAMEERDEEAAENMSDGLPTSSF
EREDSGDLEDDVNEPSSVTLEGGLKIPHSIFDQLFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTVQVLAFLGALHFSNIYKPSIIVCPVTLVRQWKREARKWCPGLLAEILHDSAHDP
TYKKMQEKSDGSDESEDSEESDYRKNSQSKGSKKWDSLINRVWGSESGLLITTYEQLRLL
GEKLLDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDF
VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AHLPKKTEHVLFCSLTFEQRSVYRAFLASSEVESILDGNRNSLSGIDVMRKICNHPDLLE
RDHAFQNPDYGNPERSGKMKVVEEVLKVWKEQGHRVLLFAQTQQMLDILERFLVGGGYTY
RRMDGGTPVKQRMALIDEFNNSYEVFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDM
QARERAWRIGQQRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMK
DLFTLNEDGMNGSTETSTIFSQLTDSVNVVGVQKNEKDEQKSGSGSVLYADSADENLCKS
EIETSGRNGSVEMGQGGGADEDTNILKSLFDANGIHSAVNHDIIVNADDGEKIRLEEQAS
QVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGAPSSVRRKFGSTVNSLVNNNSKSSD
EVSRNGTSHLNGYAAGASCGKALSSAELLAKIRGNQERAISAGLEHQTTPSSSSNNVRVA
GIGSSRSSKNLSVVQPEVLIRQICTFIHQRGGTTDSASIVQHFKDRIPSNDLPLFKNLLK
EIAILEKSPSGSFWVLKPEYKQ
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaggaggatcggattttgctgaacagcttgggtgtgacatctgctaatccc
gaggatatagagcgggacttgctagagaaggcaaaaaagaatagtgagaatagtgttgaa
gttggagcgattgcagaggaaaacgtttgtgataagttggatagcactgattcaccttct
gccagccatgtgcagctctatcagaagcttagggctgtagaatatgaaatagatgctgtt
gcatcaacagtggaaccggggaagaaacttgaaagaaatgaagaacattcttacgttggc
accgattcccaggagcatgggcgtgaagtggatggtgtttcagcttctgcagatggcctt
cagcatgcaatagcagttgacaggctaagaagcctgaagaaaacccaacagcagttgaag
aaagaactttctcatttgaatgacaaacacgccaagacaatattggagatagtcaaggac
agatcaaaacctaagagaaagtctaaagaggttaagaaatcagtaaacaatggagaaaag
aggttgaaagttgtgtcatttgatgaagataatgattttgatgcagctttggatgcagcc
actgtgggctttgttgaaacagaaagagatgagttggtacggaagggaattttaacacca
tttcacaagttaaagggctttgaacgccgtcttcaaaatccagggcaatcaagtcttcaa
aaccccaggggatcaaggtgtgaagtaaagacggaagaagaggaacacgatgactttgct
tctgacagtgtcgctagagccctccagtcaatgtcagtggctgcacaagctcggccaacc
actaaattgcttgatccagaagctttgccgaagcttgatccaccaactcatcctttctac
aggttaaaaaaacttgcaaaggttcccctatctgcagaagacaaagctacaaagaaaata
aaatgcaaaaaacctagacggcctttgccagataaaaaatatagaagacgaattgccatg
gaggaaagagatgaggaagctgctgagaatatgtcagatggtttgcctacatcaagtttt
gaaagagaagattcaggagatttagaagatgatgttaatgaaccttcttctgtaacactt
gaaggcgggctgaaaattcctcatagcatatttgatcagctttttgattaccaaaaagtt
ggggtgcagtggttatgggaattgcattgccaaagggcaggtggaattattggagatgag
atgggcctcggaaagacagtccaggtcttggcctttttaggtgcattacatttcagtaac
atttataaaccaagcatcattgtctgccctgttacactagttagacagtggaagagggag
gcacggaaatggtgcccaggacttctggcagaaatcctacatgattctgctcatgatccc
acttataagaagatgcaagaaaaatctgatggaagtgatgaaagtgaagattcagaggaa
agtgattataggaagaactcacagtccaaaggctcaaaaaaatgggattccttgataaac
cgtgtttggggttcagagtcgggtttgctcattaccacctatgaacaactacgactgtta
ggcgagaagttgcttgacattgagtggggttatgcaatcctggatgaaggacatcgtatt
cgaaatccaaatgctgaagtcactttagtttgcaagcagctacagacagtacaccgcata
ataatgactggctctccaattcagaacaaattgaccgagttgtggtccttgtttgatttt
gttttccctgggaagctgggggtgttgcctgtatttgaagcagagtttgcagttcctata
tcagttggtggctatgctaatgcctctccattgcaagtatcaactgcatataggtgtgct
gtcgttcttcgtgacttgattatgccctatcttcttagaaggatgaaagcggatgtaaat
gctcatttgccaaagaagactgaacacgttctcttctgcagccttacttttgagcaacgt
tctgtgtatagagcattccttgcaagctctgaagtggaaagtattttggatgggaataga
aattctctttctggaattgatgtaatgcgtaaaatttgcaaccatccagatctactcgag
agagaccatgcttttcagaatcctgactatgggaatcctgaacgtagtggaaaaatgaag
gtggttgaggaagtgctgaaggtctggaaggagcaaggtcaccgggttcttcttttcgct
cagacccaacagatgcttgacattttagagagatttctggttggaggtggttatacttat
aggaggatggatggtggtactcccgtcaaacagagaatggccttgattgacgaattcaat
aattcctatgaagtgtttgtttttattttaactaccaaggttggtggtctgggaaccaac
ttaactggagcagatagggtgataatctttgaccccgattggaatccatcgactgacatg
caggctagggagcgtgcttggcgtattggtcaacagcgggatgtaacagtgtatagattg
atcactcgtggaactatagaggagaaagtgtaccatcgacagatatataagcattttctc
actaataagatactaaagaacccacagcagaaaaggttctttaaggctagagacatgaag
gatctctttacactgaacgaggatgggatgaatggatcaacagaaacatcaactattttc
agtcagttgactgatagtgtaaatgttgttggtgttcagaaaaatgagaaggatgagcaa
aaatctggcagtggctcagtattgtatgcagactctgctgatgaaaacctatgcaaatca
gagattgaaacttctggaaggaatggttccgtagagatgggccagggtggtggagcagac
gaggacacaaatatcttgaagagcctttttgatgcgaatggtattcatagcgctgttaat
catgatatcattgttaatgctgatgatggggagaagatacggctagaggagcaagcttct
caagttgcacgtagagcagccgaagcattgcgtcagtctagaatgctgcgaagtaacgag
agcatctcagttccaacatggactggaaaagctggaactgctggtgcaccatcgtctgtg
cgtcggaagtttggttcaactgttaactctctagtaaacaacaattccaaatcctcagat
gaagtatctagaaacggaactagccatttaaatggctatgctgctggagcatcttgtgga
aaggccttatcttcagcagagctgctggctaaaatccgaggaaaccaagaaagagcaatc
agcgctgggcttgaacatcagacaactccttcaagtagttcaaataatgtaagagttgct
ggtattggttcttctcggtcgtcgaagaacttatctgtagtacaacccgaagtattgatt
cgtcagatttgtacatttattcatcaaagaggtggaaccactgattcagccagtattgta
cagcattttaaggacaggataccctcaaatgatttgcccttgtttaagaatctgctgaaa
gagatagcaatattagagaaaagccctagtggttcattctgggttctgaagccagagtat
aaacagtaa
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