Benincasa hispida (wax gourd): 120077912
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Entry
120077912 CDS
T07258
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120077912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120077912
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
120077912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
G6PD_C
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
120077912
NCBI-ProteinID:
XP_038887941
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All DBs
Position
5:complement(40888924..40901484)
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AA seq
934 aa
AA seq
DB search
MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICKKCDSSVARLSATSPILVLDTNVV
LTQIDLLENPAIDDVVMLSVVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHRDTYI
KEMSGESKNDRNDRAIRVAAQWYQNHLGGATRVLLISNDRENRRKAIEEGICAETIESYV
RSLGQTHLLDLLVQSANEDANMEDVEDLRPSKRKVLYSEHKPMSEITSGLHRGIYHQGKL
RVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIVDEE
DEEEEDVHLVPGSADDAPRAASVLQGSSGDSSSSSPRPAGRVVGIIKRNWHSYCGSLDPM
PMPAGSGGVAYALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRLSRYPSGHYVRS
IGEIGDRDTESEVVLIENDINSRPFSSQVMACLPPLPWSVSPVDVANPIRQDLRHLNVFS
VDPPGCKDIDDALHCTALPNGNFEVGVHIADVTNFVHPGTALDDEAAQRGTSVYLVERRI
DMLPKPLTEDICSLRADVERLAFSVIWEMTPEADIVSTSYTKSIIKSSAALSYVEAQARM
DDSRLMDPITRDLRNMNALAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIR
EANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPTPTKEMLEPLIRTAVAVGLDLDVSS
SKALADSLDRALGDDPYFNKLIRILATRCMTQAVYFYSGDLSPPEYQHYGLAAPLYTHFT
SPIRRYADVIVHRLLAASLGIFKLPTLFLDRPKLTTIADNLNYRHRNAQMAGRASVELHT
LIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLSGKCEKQSGEWFVDEQEQKIKK
LDGSITYNILQAVRIHMEVVEPQPNRPKLQLTLL
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttgcataacaagtcgtttgttaaaaagacaaagtctgggaaggtgatgaagcaagtg
agagaacactatcttcgagatgatatatattgcgggacttcaatttgcaaaaaatgcgat
tcttctgttgctcgcttgagtgctacatctccaattctagttcttgacaccaatgttgtt
cttactcagattgatttgctcgaaaatcctgctattgatgacgtggttatgctatcagtt
gtgctggatgaggttaagaacaagaacttgtctgtttacaatagagttagagctctctgc
agcaatcctttgcggagattctttgttttctctaacgagcaccacagggatacatatatt
aaggagatgagtggagaaagtaaaaatgatcgaaatgatagagcaattcgagtggctgct
cagtggtatcagaatcatcttggtggtgctactcgtgttctactcataagcaatgacaga
gagaataggagaaaggccattgaagagggaatttgtgcagagacgattgaatcatatgtt
agatctttgggtcaaactcatttacttgacctattagtgcaaagtgcaaatgaagatgca
aatatggaggacgttgaagatttgaggccatcgaagagaaaggttctttactctgagcat
aaacctatgtcagaaattacttctggtttgcatcgtggtatatatcatcaaggaaagctc
cgtgttaatcgatacaatccatttgaagcatatgtgggaagtgagagtattggtgatgaa
attatcatttatgggcgtaccaacatgaaccgggctttcgatggtgatgttgtggcagtt
gaacttctgtctcgagatcagtggcatgaagagaagtctctgactatagtagatgaagaa
gatgaagaagaagaagatgttcatcttgttcctggtagtgctgatgatgccccaagagct
gcatctgtgctacagggctctagtggagattcttcttctagttcaccacgtccagctgga
cgtgttgttggtatcataaagcgtaactggcattcttattgtggttctttggatccaatg
cctatgcctgccggaagtggcggcgtcgcctatgctctatttgtttccaaagatcgtcgg
attcctaagattagaatccaaactcgtcagcttgagaatcttttggacaagagaattatt
gtagcagttgattcttgggaccgtctatctagatatccttcaggacattatgtgcgatct
ataggagaaataggagatcgggatacagaaagcgaggtggtcttaattgaaaatgatata
aactccaggccattttcttcacaagttatggcatgcttgccaccattaccatggtcagtg
tctcctgttgatgtagcaaaccccattcgacaggatttgcggcatttgaatgtttttagt
gtagaccctccaggttgcaaagatatcgatgatgcacttcactgtacagctcttccaaat
gggaattttgaagttggagttcatattgctgatgtaacaaattttgttcatccgggcact
gcactggatgacgaggctgcacaaaggggcacatcagtctaccttgttgagcggaggata
gatatgcttccgaaaccattaacagaagatatatgttctcttcgagctgatgtggaaaga
ttggcattttcagtaatttgggaaatgacacctgaagccgatattgtttctactagctac
accaaaagcatcattaaatcaagtgccgcattatcatacgttgaagctcaagcaaggatg
gacgacagtcgattgatggatccaataactagagatttgagaaatatgaatgctttagca
aagaaaatgaggttgagacgaattgagagaggagctttgactcttgcttctgctgaagtt
aaatttcaaattgacaccgagacacatgaccctcttgatattggtatgtatcaaattcga
gaagctaaccaaatggttgaggagtttatgcttgcagcaaatgtttcggtagcagaaaaa
attttaaagcattttccgctgtgttcgttattaaggcgccatcctacaccaactaaagag
atgctcgaacctttgattcgcacagctgtagctgttggtcttgacttggatgtctcatca
tcgaaagctctggctgattctcttgatcgtgcattgggtgatgatccgtacttcaataag
ctgatcagaattttagctactagatgtatgacacaggctgtttacttctatagcggagac
ctcagtcctccagaatatcaacattatgggcttgcagcacctctctatacccatttcacc
tctcctattcgacgatatgcagatgtcatcgtgcacagattgctcgctgcttctttggga
atattcaaacttccaacactattccttgatagaccgaaactcactacaatcgctgataac
ttaaattaccgacatagaaatgcccaaatggctggccgggcttcagtggagcttcatact
ctaatttacttcaaaaaacggcctacggacacggaggccagaatagtgaagataagatca
aatgggtttatagtatttgttcccaaatttggtatcgaaggaccggtatacttgtcagga
aaatgtgagaagcaaagtggagaatggtttgtggatgagcaggaacagaagatcaagaag
ttggatggaagcatcacatacaacattctacaggcagtgagaattcacatggaggttgtg
gagccccaaccaaatagaccaaagctccagcttactcttctttaa
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