Benincasa hispida (wax gourd): 120079058
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Entry
120079058 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120079058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120079058
03041 Spliceosome [BR:
bhj03041
]
120079058
03009 Ribosome biogenesis [BR:
bhj03009
]
120079058
03016 Transfer RNA biogenesis [BR:
bhj03016
]
120079058
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120079058
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120079058
Spliceosome [BR:
bhj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120079058
Complex C
U4/U6.U5 tri-SnRNP related factors
120079058
Ribosome biogenesis [BR:
bhj03009
]
Eukaryotic type
Pre-60S particles
Helicases
120079058
Transfer RNA biogenesis [BR:
bhj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120079058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120079058
NCBI-ProteinID:
XP_038889177
LinkDB
All DBs
Position
6:32929745..32957750
Genome browser
AA seq
1014 aa
AA seq
DB search
MEESPTLGKRKDSEEESAVAETGNNQETSSNKRPKESKNLEDEKATPSQETVSNRRSLAR
TCVHEVAVPAGYSSTKDESIHGTLSNPVYNGTMAKTYPFTLDPFQQVSVSCLERNESILV
SAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTLS
PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKM
VFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPAGGNGLYLVVDENEQFR
EDNFLKLQDTFAKQKQIVGHRTANGKSSGRIAKGGSASGGSDIYKIVKMIMERNFQPVIV
FSFSRRECEQHAMSMSKLDFNTQEEKDMVEHIFRNAILCLNEEDRELPAIELMLPLLQRG
IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAFKKWDGDSHRF
IGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMGTIKDMILGKPAPLVSTFRLSYYSIL
NLMSRAEGQFTAEHVIRHSFHQFQHEKALPDIGKRVSKLEEEAATLDASGEAEVAEYHKL
KLDIAQLEKKMMSEITRPERVLYFLLPGRLVKVREGGTDWGWGVVVNVVKKPSAGLGILP
SRGGAYIVDTLLQCSPCLSENNSRPKPCPPRPGEKGEMHVVPVQLPLISALSKLRISIPS
DLRPVEARESILLALEELGTRFPQGFPKLNPVKDMSIEDPEIVELVNQIEELERKLYAHP
LHKSREVDQMKCFQRKAEVNHEIQILKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGV
VQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIAALASCFIPGDKSNEQIQLRTELA
RPLQQLQDSARRIAEIQHECKLDINVEEYVESTVRPYLMDVIYCWSKGSSFSEVIQMTDI
FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcccacccttggcaagcggaaagactctgaagaagaatcagctgtcgca
gaaactggcaacaaccaagaaacgagctccaataagcgacccaaggaatcgaaaaacctg
gaagatgagaaggcaactccgagtcaggaaactgtctccaaccgacgcagtttagcgcgg
acttgcgttcatgaagtagcggtcccggctgggtactcttctacaaaagacgagtcgatt
catggaaccctatcaaatccagtttacaatggtacaatggcgaaaacgtacccgtttaca
ctcgacccatttcagcaggtatcggtttcttgcttagaacgaaatgaatctattttggtt
tctgctcacacttcagctggaaaaactgcggttgctgaatatgcaattgcaatggctttt
agagacaagcagagggttatatatacttccccactgaaggctttgagtaatcagaagtat
agggaactgagtcaagagtttaaagatgtgggactgatgactggggatgttactctttcg
cctaatgctagttgtttagtcatgacgacggagatacttagggggatgctttacaggggt
tcggaagttttgaaggaagtagcatgggtaatttttgatgaaattcattatatgagagat
cgggaaagaggtgttgtttgggaagagagtataatatttttaccaccggctatcaagatg
gtcttcctttctgcaacaatgtccaatgccacggagtttgctgagtggatatgtaatata
cacaagcagccttgtcatgtggtgtacactgattttcgaccaactcccttgcaacattat
gtttttcctgcgggtggcaatgggttgtatcttgtggttgatgaaaatgaacagttcagg
gaggataattttctgaagttgcaggatacatttgctaaacaaaaacagattgttggccac
aggactgcaaatgggaaatctagtgggagaattgctaaaggtggcagtgcttctggaggt
tcggacatttataaaattgttaagatgattatggagcggaatttccaaccagtcattgtc
ttcagtttcagtagaagagaatgtgaacaacatgcaatgtccatgtccaaacttgacttt
aatacccaagaagaaaaggacatggtggaacatattttcagaaatgcaattctttgcttg
aatgaagaagatagagaactgcctgcaattgagttaatgttacctcttctccaaagaggt
attgctgttcatcattctgggcttcttccagtaattaaagaattagttgagctccttttt
caggaaggtcttgttaaggccctttttgccacagaaacttttgccatgggtctgaacatg
ccagcaaaaacagttgtcttcactgcctttaaaaagtgggatggtgatagtcaccgattt
attggatctggtgagtacattcagatgagtggaagggctggacgccgtggaaaagatgag
aggggtatatgtattataatgatcgatgagcagatggagatgggaacaattaaagatatg
attttgggcaaaccagctcctcttgttagtacgttcagactgagctactactcaatttta
aatttaatgagccgggcagaaggccagtttacagctgagcatgttattagacactcattt
catcagtttcagcacgagaaggcattgcctgatattgggaaaagagtgtcaaagttagag
gaggaagctgccacacttgatgcttcaggggaggccgaagttgctgaataccacaagtta
aaacttgatatagcacaacttgagaagaagatgatgtctgaaataacaaggccagaaaga
gtcctctattttcttcttcctggtcgattggttaaggtaagagaaggtgggacagattgg
ggttggggagttgtagtcaatgttgttaaaaagccttcagctgggttaggcatcttgcct
tcacgtggtggtgcatatatagtggataccttactccaatgctctccttgtctaagcgag
aataattcacgaccaaaaccttgtccaccccgtcctggagaaaagggtgaaatgcacgtg
gtcccagttcagctgcctctaatttcagccttgagcaaactcagaatatctattccttct
gatctcagacccgtggaagcaagggaaagtatactgctcgcattggaagagctgggcact
cgttttccacaaggttttccgaaattgaatccagtcaaggacatgagtatagaagatcca
gaaattgttgagttggtgaatcagatcgaggaacttgagcggaaattatatgctcatcct
ctgcataagtcacgtgaagtggaccagatgaaatgttttcagaggaaagcagaggttaat
catgaaattcaaatactcaagaccaaaatgcgtgattctcagcttcaaaaatttcgtgat
gaactgaagaatcgttctcgggtcttgaaaaagcttggtcacattgatgctgatggtgta
gttcaattgaaggggcgtgcagcctgcttgatcgacacaggagacgagctccttgttact
gaattaatgtttaatgggacattcaatgacctagatcatcatcagattgcagccctcgca
agttgttttataccaggagacaagtcaaatgagcagattcaattaagaaccgagcttgct
agaccgttacagcaactccaagatagtgcaagaagaatagctgagatacaacatgaatgc
aagttggatataaatgtggaagaatatgtggaatcaacagtaaggccgtatttgatggat
gtcatttactgttggtcaaagggatcaagtttctcagaggtgattcaaatgacagatatt
ttcgagggtagcatcattcgaagcgctagacggcttgatgaattcttgaatcagttgcgt
gctgctgccaatgctgtgggggaggtaaccttagagagcaagttttctgcagccagtgac
agcctccgcagaggtataatgttcgcaaactcactctatttatag
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