Benincasa hispida (wax gourd): 120079323
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Entry
120079323 CDS
T07258
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120079323
03036 Chromosome and associated proteins [BR:
bhj03036
]
120079323
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120079323
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
120079323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Tex_central_region
Spt6_S1
HHH_9
SH2
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
120079323
NCBI-ProteinID:
XP_038889402
LinkDB
All DBs
Position
6:30115922..30129610
Genome browser
AA seq
1621 aa
AA seq
DB search
MGKAVISDEEDEVELDDREPLDGDDVDGHNMGDEEDEEDEEGEDEYEKDGFIVDDVEEED
EEDVEEREDSDDERQKKKKRKKKEEYVLDEDDYELLEDNNISIQRPKGSKKFKRLKKARR
DNLEPSGFSDDEDFVESSRGGRTAEEKLKRSLFGDDEAPLEDIAEEEEQPEEEEDADIGD
EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR
ELDTHEWREKRLEDEFEPIVISEKYMTEKDDQIREIDIPERMQISEESTGSPPMNDASLD
DEASWIHGHIANGMYPLFGDASGQDLSVTKDDILRYLDLVHVQKLDIPFIAMYRKEEILS
LLKDTEHEAGDDQDKNDKTPTLRWHKILWAIQDLDKKWLLLQKRKKALQSYYKNRYLEEI
RTAEHVTRTSLNRQLFDSVNKSLEAAESEREVDDVDLKFNLHFPPGEVGVDEGQFKRPKR
KSLYSICSKAGLWEVAGKFGYSSEQFGLQLSLEKMRNDELEDPKETPEEMASNFTCAMFE
SPQAVLKGARHMAAIEISCEPCVRKHVRSYFMDYAVISTSPTPDGNVAIDSFHQFSVVKW
LREKPLSRFEDAQWLLIQKAEEEKLLNVTLKLPEKHLNKLISDFNEYYLSDGVSKSAQLW
NEQRKLILQDALSGFLLPSMEKEARSLMTSKAKKWLLMEYGKNLWNKVSVGPYQHKENDI
SSDEEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQE
RVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDES
LPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPLENF
LTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQRSLVRAG
SIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQEL
AKDVFDEDVKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKRETFLDIKRE
LMQGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTG
MLMKEDYADDSREISDLSDRLHEGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQN
LDPYYHEDRSSLQSEQEKSRKEKELAKKHFKPRMIVHPRFQNITADEAMELLSDKDPGES
IVRPSSRGPSFLTLTLKIYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDE
VMDRYVDPLVSHLKAMLSYRKFRRGTKAEVDELMRIEKSEYPMRIVYGFWISHEHPGTFI
LTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDSAPSIRSFAAMV
PMARALQTGGSSAASAGSPWGGSSHDGGWRSQSFDRDRSSTPGSRTGRHDNRNSGGRDGH
PSGLPRPYGGRGRGRGSYNNNRGNNDRSDSSYDGGSRWDSSSKDGDDGLSNFPGAKIQNS
HRQRSLSGGWSSGSGGGGNGWSESNGGGGGGGGXGCWGGTGGNSKGNWGGSGASNSGGWG
S
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggcggtgatctctgatgaagaagatgaggtcgaattggacgaccgggaacca
cttgacggtgacgatgtcgatggtcacaacatgggggacgaggaagacgaagaagatgaa
gaaggagaggatgagtatgaaaaggatggtttcatagttgatgatgttgaagaagaagat
gaagaagatgtggaagagagggaagacagtgatgatgaaagacagaagaagaagaaaagg
aagaaaaaagaggaatacgtgctagatgaagatgactacgaactccttgaggacaacaat
attagcattcaacggccgaaggggagcaaaaagtttaagaggcttaaaaaagctcgaagg
gacaatttggagccttctggattttcggatgatgaggattttgtagaaagcagcagaggc
ggacgaactgctgaggaaaaacttaaacgtagcttgtttggtgatgatgaagctccactt
gaggatattgcggaagaggaggaacaacctgaagaggaagaagatgctgacattggagat
gaggatgaaatggctgatttcattgtagatgaagaagttgacgaggatggggctccctta
aggaggaggaagttgaagaaaaagaagtccaggcaagcacctggtgtatcatcaactgct
ttgcaggaggctcatgaaatttttggtgatgttgatgaactccttcagcttcgcaagaga
gaattggatactcatgagtggcgtgagaagagattagaagatgaatttgaaccaattgta
atttctgagaagtatatgacagaaaaagatgaccagataagggaaattgatatacccgaa
agaatgcagatttcagaggaaagcaccgggtctcctcctatgaatgatgcgagtctcgat
gatgaagcctcatggatacatggtcatattgctaatggaatgtaccctttgtttggtgat
gctagtgggcaagacctatccgtaacgaaggacgatattctgcggtatctggatcttgta
catgtccaaaaattagatataccattcattgccatgtataggaaagaggagattctaagc
ttgttaaaagatacagaacatgaagctggtgatgatcaggataaaaatgataaaacacca
acattaaggtggcataagatactttgggcaattcaagacttggacaaaaagtggctgctt
cttcagaagcgaaagaaggctcttcaatcatattataaaaaccgatatttggaggagata
cgtacggctgaacatgtaactagaacctcgctaaatcgccagctttttgactcggtcaac
aaatctctcgaggcagctgaatcagagagagaggtagatgatgttgacttgaaatttaat
ttgcattttcctcctggtgaagttggtgttgatgaaggacaattcaaaaggcctaagagg
aaatcactgtacagtatatgtagtaaggccggtttatgggaggttgcaggaaaatttggt
tatagctctgagcaattcgggttgcagctctccttagaaaaaatgagaaatgatgagttg
gaggatccaaaggaaacacctgaagagatggcatcgaactttacctgtgcaatgtttgag
agtcctcaagcagtactcaagggagctaggcatatggctgctattgagattagttgtgag
ccttgtgtaaggaagcatgtcaggagctactttatggactatgccgtgatatcaacaagt
cctacgccagatggaaatgttgctatagattcttttcatcaattttcagttgttaagtgg
ctccgtgaaaagccattaagtagatttgaggatgcacagtggcttcttattcagaaagct
gaagaagaaaaacttctgaatgtcactctcaagctacccgaaaagcatttaaataagttg
ataagtgacttcaatgaatattatctcagtgatggtgttagcaaatctgctcagctttgg
aatgagcagagaaagttaatattgcaggatgcactttctggttttcttctgccttcaatg
gagaaagaagcaagatccctgatgactagtaaagcaaaaaagtggttacttatggaatat
ggaaagaatttatggaataaagtatctgttggtccatatcaacacaaagaaaatgatatt
agttctgatgaagaagctgccccaagggtaatggcatgctgttggggtcctggaaagcca
gctaccacctttgtgatgctagactcatcaggcgaggtgcttgatgttctttacactgga
tctctcaccctacgttctcaaaatgtgaatgaccaacaacggaagaaaaatgatcaagaa
cgagttttgaagttcatgacagaccatcaaccacatgttgttgttttaggagctgttaat
ttatcttgtaccagattgaaagatgatatttacgagatcatctttaagatggtggaggag
aatcctagggacgttggacatgagatggatggattaagcattgtatacggtgatgagtcc
ctccctcggctgtatgaaaattctaggatttcctctgaccaattgcaagggcaatcaggg
attgtgaagcgtgctgttgctcttggacgttatctgcaaaatcctctggctatggttgcg
acactttgtggtccaggaagggagatcttatcttggaaactaaatcctttggagaatttt
ttgaccccagatgaaaaatacgggatggttgaacaggttatggtggatgtgaccaaccag
gttggcctggatactaatttggctataagccatgagtggttgttcagcccattgcaattc
atagctggccttggacctagaaaggcagcttctttgcagagatccttggtgagggctgga
tcaattttcacacggaaggactttgttacagcgcatggtcttggtaaaaaagtatttgtt
aatgcagttgggttcctgcgtgttaggcgaagtgggttggctgcaagcagcagccaattt
atagatttattggatgatacgagaattcaccctgaatcttatgctctggcacaagaatta
gcgaaagatgtttttgatgaagatgttaaaggtgatgcaaatgacgatgaggatgcagag
atggctatagagcatgttagagaccgacctcatttattgaggactcttgatgttgatgaa
tatgccaagagcaagaaacgggaagataaaagagagacttttcttgacataaaaagagaa
ctgatgcagggttttcaggattggcgtaagcaatatgaagagcccagtcaggatgaagag
ttttacatgatatctggtgaaaccgaggacacccttgcggaggggagaattgtgcaggct
acagtccgcaaggtactaggtcaaaaagcaatttgtggacttgaatctggattgactggg
atgcttatgaaagaagattatgcagatgattctagagagatctccgacttatctgatagg
ttgcatgagggggatattgttacttgcaagatcaaatcaattcagaagaatcggtatcag
gttttccttgtttgtaaggagagtgagatgagaagtaaccggcaccaaattactcagaat
cttgatccctactatcatgaagatcgaagcagcctacagagtgagcaagaaaagtctcgg
aaagagaaggaacttgcgaaaaagcatttcaagccaagaatgattgttcaccctcgattc
caaaatataacagcagatgaagcaatggagctcttgtctgacaaggatcctggtgaaagt
attgtccgacctagttctcgtggaccttcttttttgactttaacacttaaaatttacgat
ggagtatatgctcacaaagatatagtggaaggtggaaaggagcataaagacatcactagc
ttgttgcgtattgggaagaccttgaaaattggggaggacacttttgaggatttggacgag
gtgatggatcggtatgttgatcccttagtttctcacttaaaggcaatgctaagttatcgt
aagttcaggaggggtacaaaagctgaagttgatgaacttatgaggattgagaagtcagag
tatccaatgagaatagtttatggtttttggatatctcatgaacatccgggtacattcatt
ttgacatacatacgaagtacaaatccacaccatgagtacattggtctctatccaaaggga
tttaaatttaggaaaagaatgtttgaagatattgataggttggtggcctattttcaaagg
cacatcgatgatccccagcatgattcagcaccatcaattagatcatttgctgctatggta
cccatggcgagagccctgcaaactggtggctcttcagcagcatctgcaggtagcccttgg
ggtggttcatcacatgacggtggctggagaagccagtcatttgacagggatcgttcttct
actcctgggtctagaacagggagacatgacaacaggaattctggtggtcgtgatggacat
ccaagtggtctgcctagaccatatggtggacgtgggcgtggtcgaggctcatacaataat
aatagagggaataatgaccggtcagattctagttatgatggcggctccagatgggattca
tcttccaaggatggggatgatggattaagcaacttcccaggagctaaaattcaaaattca
cacaggcaaagaagcctttctggtggctggagctctgggagtgggggtggtggtaatgga
tggagtgaaagcaatggcggtggcggtggcggtgggggcnnggggtgttggggtgggact
ggtgggaattccaaaggaaattggggtggttctggtgcaagcaacagtggggggtggggt
tcttaa
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