Benincasa hispida (wax gourd): 120079415
Help
Entry
120079415 CDS
T07258
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120079415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120079415
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
120079415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
120079415
NCBI-ProteinID:
XP_038889512
LinkDB
All DBs
Position
6:46654312..46656651
Genome browser
AA seq
217 aa
AA seq
DB search
MGDDGRLHAMDDDEASAADQRPSIHIYPLSNYYFESKEPLLFKDETFADRLLRMKSNYAA
YGLRTSVEAVLLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDVDGLTRKLSRKLSANG
ASDASDWEVGECLGMWWRPDFETLLFPYLSSTVKGAKECTKLFLVKLPESRKFVVPKNLK
LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFDIIET
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgacggacgtttgcatgctatggacgacgatgaagcttccgccgccgaccaa
cgcccatccatccatatttaccctctcagcaactactactttgaatccaaagagcctctt
cttttcaaggacgagaccttcgctgatcgcctcctcaggatgaaatccaattatgccgct
tacggattgaggacttctgtcgaagcagttttgctggttgaactattcaagcatcctcat
ttgttgctgtttcaaatacgtaattcaattttcaagcttcctggtggtcgcctaaggcct
aacgaatcggatgttgatggcttgacgcgaaagttgtcaaggaagctttctgccaatgga
gcctctgatgcatctgattgggaggtgggcgagtgcctcggtatgtggtggaggcctgac
tttgaaaccctgctctttccatatttgtccagtactgttaaaggggccaaggagtgcact
aaacttttcctggtcaagttgccggagagtcgaaaattcgttgtgccaaagaacctcaag
ttgatcgctgttcctttatgccaaattcacgaaaaccataagacatatgggccagttata
tctggcattccgcagctgctttctaagttctccttcgacatcatcgaaacctaa
DBGET
integrated database retrieval system
