Benincasa hispida (wax gourd): 120079660
Help
Entry
120079660 CDS
T07258
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj04120
Ubiquitin mediated proteolysis
bhj04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120079660
04120 Ubiquitin mediated proteolysis
120079660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bhj04121
]
120079660
Enzymes [BR:
bhj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120079660
Ubiquitin system [BR:
bhj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120079660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120079660
NCBI-ProteinID:
XP_038889876
LinkDB
All DBs
Position
6:complement(48514899..48528109)
Genome browser
AA seq
556 aa
AA seq
DB search
MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQL
TKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLA
QKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTRKASVSLFFSFEYM
ILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYG
VPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMT
VAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAGGHHGVQSDANQQGTGTT
SSSAQGTSGTGVTNDNLSHHQARVRAAAAAASIYEKSYVYPCPSTLVWSLGYAVVPQVER
PLPDSDNTETNGEQTPNGHPQYFSFPSGPSNLSFTQFPQNLFVPFQPREGTGNNTDELGS
SLNVSGSQLEAQEKFLQQIEILQNQLQLLRRPKVEESSRAGEADKKGKSLATSSSPLPSS
SSLDSHPSGETERAAI
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagttgcaaacatatgcggggattagttttattgcaaccatagtggttatctat
catgccttcaacagtagagggcagttctacccagcattggtctatttatcgacttccaag
ataaatttagtgcttcttctcaatatgggtttagtgatcatgtgcatcttgtggcagcta
acaaaaaaaatatttctgggttctcttagagaagcagaagttgagaggctcaacgagcaa
tcatggaaggagttgatggaaatcctctttgccatcactattttccggcaagacttttct
gttgcattcctgggtatggttacggctttgttgttgatcaaagctctgcattggctggct
cagaagagagttgaatacatggaaaccactccatcggtgcctttgttgtcccatatccgg
attgtttctttcttaggcttcctctttgttctagatagtctgtttttttataattcgata
gaatctctgatacagacaaggaaggcctcggtttccctcttcttttcatttgagtatatg
attcttgcaacaacagctgtgtcaacatttgtgaaatatattttctatgtcagtgatgtg
ctcatggagggacaatgggaaaggaaacccgtctatacattttacttggaacttatacga
gacttacttcatttgtcgatgtacttgtgtttctttcttgtgattttcatgacttatggt
gtgcctttgcacttgatccgggagctttatgagatctttaggaattttaggattcgcatt
gcagattacatccgttacagaaagattacttcaaatatgaatgatcgttttccagatgca
acgcccgaggaactcaattcaagtgatgcaacatgcattatttgtcgtgaagagatgaca
gttgcaaagaaactagtatgcggacatctttttcatgtccactgcctccgatcctggttg
gagcgacaacatacttgtcccacttgcagagctcttgttgtaccacctgaaggttcaagc
acagcaggcggtcatcatggagtgcagtctgatgctaaccaacaaggaacaggaaccaca
agttcatctgcacaaggtacaagtggtacgggcgttactaatgataatttgagtcatcat
caggctagagtccgtgctgctgccgctgctgcttcaatatatgagaaatcatatgtttat
ccttgtccgagcacattagtatggtctcttggatatgcagtagttcctcaggttgaaaga
cctttgcctgactccgacaatacagaaacaaatggagaacaaactcccaatggacatcca
caatacttctcatttcctagcggcccttcaaacctgtccttcactcaatttccccaaaat
ctctttgttccttttcagccacgagagggcactggaaacaatacagatgaattgggcagt
agtctaaatgtatcaggctcacagcttgaagctcaagaaaaatttcttcaacagattgag
atccttcagaatcaactgcaacttctccgtagaccaaaagttgaggaaagttcaagagca
ggcgaggcagataagaaagggaaaagtttagcaacctcatcatcaccgttgccgtcatca
tcttcattagattctcatccatccggagaaaccgaaagagcggcaatatag
DBGET
integrated database retrieval system
