Benincasa hispida (wax gourd): 120079671
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Entry
120079671 CDS
T07258
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120079671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120079671
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120079671
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120079671
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120079671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
120079671
NCBI-ProteinID:
XP_038889902
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All DBs
Position
6:3310505..3319926
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AA seq
709 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAGPTNPAATSSLPLNHSDSSAPPAASAVSNSLSGALGPAVSAE
PPGASTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGSS
NKFFTQRGVGLSQQNEKSQFPQGQPLVTQGVVTGKPSAAESANVPQQQGQQSAQQTSQTP
IQSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF
DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL
SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREE
EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIVWPP
HMPMGRGARPFPGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD
FMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGIAGTNPSRPGRPVGVSPL
YPPPAVPSSQNMNRAIKRDQRGPASERNDRYIVGLDQNKGLEMPSSGRDDEMQYKQGSKA
YSDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcggagggcgttctgagcttcgatttcgaaggcggcctcgatgccggcccc
accaaccccgccgccacctcctccttgccccttaaccactccgactcttctgccccgcct
gccgcctcagccgtctccaactccctttccggcgccctcggtcctgctgtttcagctgaa
cctcctggcgcttcaaccggcaacgtcggcaaccggaggagcttccggcaaacggtttgc
cggcattggctccgtagcctctgcatgaagggcgatgcctgtggtttccttcaccagtat
gataagtctcggatgcccatttgccggttcttccgtctctatggcgagtgccgcgaacag
gattgcgtctataaacataccaacgaagatatcaaagagtgtaatatgtacaagtttggt
ttctgtccaaatggtcctgattgtcgttataggcacgcaaagctgcctggacctccacct
ccagtggaagaaatccttcagaaaatacagcatttaggttcatacaattatggctcctca
aacaaattctttacacaacgtggagttggattatcccaacagaatgaaaaatctcagttt
cctcagggtcagcccctcgtcactcaaggagtagtgacaggaaaaccctctgcagctgaa
tctgctaatgtcccgcaacagcaagggcaacagtctgcacaacaaaccagccagactccg
atacaaagtctttctaatggccagcccaatcaattaaacagaactgccacgtctttgcct
caaggaatatctaggtactttattgttaaaagttgcaaccgtgagaatttggaattatct
gtacaacaaggggtatgggcaactcaaagaagcaatgaagctaaacttaatgaagctttt
gattctgctgataatgttattttgattttctcagtcaatcggactcggcattttcagggt
tgtgcaaagatgatgtccaggattggtggatctgtcagtgggggcaattggaaatatgca
catggaactgcacattatgggcaaaacttttcactcaaatggctgaagttatgtgaacta
tccttccagaaaacacgccatttgaggaatccatataatgaaaacttaccagtaaagatc
agtagagattgccaagagctagagccctctattggtgagcagctggcgtctttgctttat
cttgagccagatggtgaactcatggccgtctcactagcagcagaatcaaaacgagaggag
gagaaagcaaagggagttaatcctgatattggaagtgagaacccagatattgtcccgttt
gaggacaatgaagaagaggaagaggaagaaagtgaagaggaggaggaggagagctttggc
cagtccgttggtctaccacctcagggcagaggaaggggtaggggaatcgtgtggccccca
catatgccaatgggacgtggtgccagacccttccctggaatgcagggttttccacctggg
atgatgggtccggatgggctttcttatggtcctgttacacctgatggatttcccatgcct
gacatttttggtatggcccctcgtggttttggtccgtacggtcctaggttttccggtgat
tttatgggtcctccaactgctatgatgtttcggggacgaccttctcaacctggggccatg
tttccccctggtggatttggcatgatgatgggtcaaggacgtggtcccttcatgggtggg
atggggattgccggtactaacccatctcgacctggtcgtcctgtgggtgtgtctccattg
tatccacctcctgcagtaccctcatctcagaacatgaatcgagctattaagagggatcaa
aggggaccggccagtgagcggaatgatagatatattgtgggtctggaccaaaacaaaggc
ctagaaatgccaagtagtggacgcgatgacgaaatgcaatataagcagggatcaaaagcc
tattctgatgagcaatatggagtgggaaccacctttaggaatgaagaaagtgaaagtgaa
gacgaggcacctcgacgatctaggcatggagagggtaagaagaagcggcgaggttcagaa
ggagatgcgactgcaatctctaatcagtga
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