Benincasa hispida (wax gourd): 120079732
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Entry
120079732 CDS
T07258
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03030
DNA replication
bhj03420
Nucleotide excision repair
bhj03430
Mismatch repair
bhj03440
Homologous recombination
bhj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120079732
03420 Nucleotide excision repair
120079732
03430 Mismatch repair
120079732
03440 Homologous recombination
120079732
03460 Fanconi anemia pathway
120079732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bhj03000
]
120079732
03032 DNA replication proteins [BR:
bhj03032
]
120079732
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120079732
Transcription factors [BR:
bhj03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120079732
DNA replication proteins [BR:
bhj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120079732
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120079732
MMR (mismatch excision repair)
120079732
DSBR (double strand breaks repair)
HR (homologous recombination)
120079732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
RADX
zf-like
ASNSD1-SEP
Motif
Other DBs
NCBI-GeneID:
120079732
NCBI-ProteinID:
XP_038890007
LinkDB
All DBs
Position
6:46364185..46368468
Genome browser
AA seq
627 aa
AA seq
DB search
MPVHLTPNAISAIVAGDINSKPLVQVLDIKLIGNAQERYSILISDAVSAEQAMLATQLND
VIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSYAQSENFALKA
TPSRNLEQPVKVGNGHPSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIP
IAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDSF
YEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSFRR
ISEIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSIELTLWGEFC
NKEGKKLQEIIDSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRDWYDG
GGKNSTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCY
TACPLMIGDRQCNKKVTRSGNSKWQCERCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQE
TGEEILGVSAKELYMLKYEEQDEVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVV
KADRVNYTSESKYMLDLLSNQNFRGNK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcatctcacgccgaatgcaatctctgccattgtcgctggtgacattaattcc
aagcccctggtgcaggtcctagatatcaagctcatcggtaacgcgcaggagaggtacagc
atcttgatctccgatgccgtttctgctgagcaggctatgctcgcaactcagcttaatgat
gttattaagactggacgagtcaagaaaggatccgttatccagttgatcgattatgtctgc
agtcccatcaagaaccgaaagattattgttgtgctctgccttgaaactattatattggat
tgtgagataatcgggaatccaaaatcatatgctcaatcagagaattttgcactaaaggca
acgccatctagaaatttagagcaacctgtcaaggttggtaatggtcatccgagtgccaga
aatccagttcataatgtgcagagcttccaagctacagttcaacctccatatcagccacct
ccaaattataaaaatcacggtgccatcattaagaatgaggcaccagctcgtataattccc
atagctgcactgaatccttatcagggacgatgggctataaaggcaagagttactgcaaag
ggtgatctccgtcgctataataatgccaaaggagatggaaaagttttctcttttgacctc
cttgattctgatggaggagagatacgtgtgacctgcttcaatgctgttgtggatagtttc
tatgaggttatagaagttggtaaagtctacttgatttctaaaggtagcctaaaacctgcg
cggaaggattttaatcacctaaaaaatgaatgggaggttttcttggaggcatcttccacc
gtggaactgtgcccagatgaagatgataccataccaagacagcagttttcttttagacgt
atcagtgaaattgagaatgctgaaaccaactctattctggatgttattggtattgtaaca
tctgtcaatccatcgattcctgttttgagaaaaaatggtatggaaactcaaagaagagtt
gtgaacttgaaggatgcgtctggcaggagcattgagctgacactgtggggggagttttgc
aacaaagaaggtaaaaaattgcaagaaataattgactcggggctctctccagttttagct
gtgaaatctgggaaggtaagtgatttcactgggaaatccatcgggacaatttcttctact
cagcttttcataaatccagatctttctgaggctcacatcttgagggactggtacgatggt
ggggggaagaattctacgtctctgtccatttctaaagaaattatgccaggatctgccaag
aatgagattcggaagactgtgtctcagattaaagatgaaggacttggcagagctgataag
ccagattggataacggtgaaagcaacaatatcgtttatcaaaacagattctttctgctac
acagcatgtccattaatgattggagatcgacaatgcaacaagaaggtgactagatcagga
aactcaaagtggcagtgtgaaaggtgcaatcaagaatttgaggattgcgattacaggtat
cttcttcaagcccaaattcaagaccatactggattgacatgggtgacagccttccaggaa
actggtgaagagattctgggcgtttcagccaaggagctgtacatgttgaagtatgaagag
caggatgaagtcaagtttggtgaaataatcagaagtaaaattttcgatcaatttctgttt
aggctcaaaattaaggaggagatgtatggggatgaacagagggtgaaaaatactgtagtc
aaggcagatagggtaaactatacttcagaaagtaaatatatgttggatttgctttcaaat
caaaattttcgaggtaacaaatga
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