Benincasa hispida (wax gourd): 120080253
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Entry
120080253 CDS
T07258
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03013
Nucleocytoplasmic transport
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120080253
03015 mRNA surveillance pathway
120080253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120080253
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120080253
mRNA cycle factors
P-body specific factors
120080253
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
120080253
NCBI-ProteinID:
XP_038890797
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All DBs
Position
6:complement(15916469..15940053)
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AA seq
1193 aa
AA seq
DB search
MDHHEDDGRQGGESQPKRDDEETVARQEEIKKIFEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTTVIKKLKQINEEQREGLMDELRNVNMSKFVSEAVSAICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLMELFFVGVVED
SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLSPTGQDHEEFFKSLNIT
ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKILNAKGELNDENVSSYEKLRKS
YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVIEAIWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEVDQGQQASLEAIEISTDCSLQ
DGKINEKGEKGKDREEKDKEKNKDTDKEKGKEKDADRKMENEKEKLKNIEGTNLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH
KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE
LYNYELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS
KRKLDRFFIHFQKYILSKGALPLDIEFDLQDLFAELQPNVTRYSSIEEINTAFVELEEHE
RSVSNDKPNTEKHLDAEKPSRATSNSTSANGRDTVNGSKENGGAHEDGVDSDSDTGSGTI
EAEGRDDEESDLENHEDGCDTEDDEDDEEAGGPASDEDDEVHVRQKVPEVDPREEANFEQ
ELRAVMQESMDQRRQELRGRPTLNMMIPMNLFEGSRDHHGRGVGGESGDEGLDEDAGGSK
EVQVKVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEEH
NGLGSQTMNWMQTGGNRVPTRGNNWEASGGRSGGLRHPHHRYPGSGMHYSRKK
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatgatggccgccaagggggtgaaagtcaacccaagagagacgat
gaggaaactgttgctcgccaggaagaaattaaaaagatatttgaggctaaaatggctctt
cgacaaagtaatctgaatcctgagaggcctgactctggattccttagaactttggattct
agtattaaacgcaacacaaccgttattaaaaaattaaagcagataaatgaagaacaacga
gaagggctgatggatgagttgcgaaatgtaaatatgagtaaatttgttagtgaggccgtt
tctgctatctgtgatgccaagcttagaacttctgatattcaggcagctgttcagatctgt
tcgctccttcaccaaaggtacaaagacttctcaccatgcctgattcaaggactcttgaaa
gtgttctttcctggaaagtctggggatgagctggatgctgatagaaacttgaaggccatg
aagaagcgcagcactctcaaacttcttatggagcttttttttgttggagttgtagaagac
agtgcaattttcaataatattattaaggatcttacaagtattgaacatttgagggatcgg
gatactaccctaactaatttgactctccttgctagctttgctcggcaagggagaatcctt
ttgggtctatcgcctactggacaagatcatgaggagttttttaagagcctcaatattact
gctgaccaaaagaaattcttcagaaaggcttttcatacatattatgatgctgcagcagaa
ttgcttcagtctgaacatacttcacttcgccaaatggagcaggaaaatgcaaagatcttg
aatgcaaaaggggagcttaatgatgaaaatgtctcttcatatgagaagttgcgaaaatct
tatgaccatttatatcgaaatgtctcatccttagcagaagcacttgatatgcaaccccca
gtgatgccagaggatggccacacgaccagggtttctgcaggagaagatgtttcatcacct
gctgctggaaaagattcttctgtaattgaagccatatgggatgatgaagacacccgggct
ttctatgaatgcttaccagatctcagggcatttgttccagcggtgctgttgggagaagca
gaacctaaagcaaatgagcaatctgcaaagccggcagaaaatctggctgaatctgaagtg
gatcaaggtcagcaagcttccttagaggccattgagatctctacagattgttcgcttcag
gatggcaaaattaatgagaaaggtgagaaagggaaagacagagaagaaaaagataaagaa
aagaataaggatacagacaaggagaaggggaaagaaaaagacgcagatagaaagatggaa
aatgaaaaagaaaaacttaaaaatattgaaggaacaaatttggatgctttgttgcagaga
ctccctggttgtgtcagccgtgaccttattgatcagttgactgtagagttctgttatttg
aattccaagtctaaccgaaagaagcttgttagggctttgtttaatgtacctaggacatcg
ttggagttgctgccttactattcacgcatggttgcgacattgtctacttgtatgaaggat
gtatctgtcattctcctccagatgttagaggaggagttcaactttttattgaacaaaaag
gaccaaatgaacattgaaacgaagattagaaatattaggtttattggagagctttgcaag
ttcaaaattgcttcagccggccttgtttttagctgtttgaaggcatgtttagatgatttc
actcaccataatatcgatgttgcttgtaatcttcttgagacttgtggacgttttctttat
cggtctcctgaaactacagtacgaatggctaacatgttggagatattgatgcgcttgaaa
aatgtaaaaaatttggatccccggcacagcaccctggtagaaaatgcatactatctttgc
aagcctccggagagatctgcacgggtgtcgaaagttcgtccaccattacatcagtatatt
agaaagttgctcttctcagatctagacaagtctgccattgagaatgtgttgaggcaactt
cggaaacttccatggagtgaatgtgagcaataccttttaaaatgttttatgaaagttcac
aaagggaagtatggccagattcacttgattgcttctctaacgtctggtttgagtcgatat
catgatgaattctcagttgctgttgttgatgaggtattggaagaaattaggcttggactc
gaagtgaatgattatgggatgcagcaaaaacgcattgcccatatgcggtttttgggggag
ttgtacaactatgaacttgtagattcatctgtggtctttgataccctttatttgattctt
gtctttggccatggcacttcagagcaagatgtattggatccacctgaggacactttccgc
ataaggatgattatcacccttcttcaaacctgtggtcactactttgatcgaggatcttca
aagaggaaacttgatcgattttttatacacttccagaaatatattctcagcaaaggagca
cttccattggacattgagttcgacttacaggatttatttgcggaactgcaaccgaacgtg
accagatactcatccattgaagagataaatactgcttttgtagaacttgaggagcatgaa
cgttcggtctcaaatgacaagcccaatactgagaaacaccttgatgccgaaaaacccagc
agagcaacttccaatagcacctcagctaatggaagggacacggtgaatggctctaaggaa
aatggtggagctcatgaagatggcgttgatagcgacagtgatacgggaagtgggactatt
gaagcagagggacgtgatgatgaagagtcagacttggagaatcatgaagatggatgtgac
acagaggatgacgaagacgatgaagaagcgggtgggcctgcttctgatgaggatgatgaa
gttcacgttagacagaaagtgcctgaggtagaccctagagaagaagccaatttcgagcaa
gagctcagggctgtaatgcaggagagtatggatcagcgcaggcaagagcttcgtggccga
ccaacattgaatatgatgataccaatgaatttgtttgaggggtcgagagaccaccatgga
aggggggttgggggagagagtggggatgagggattggacgaggatgctggtggaagcaag
gaggttcaagtgaaagttcttgttaagcgtgggaacaagcagcaaaccaagaagatgtac
atccctcgtgattgcacacttttacagagcactaaacagaaagaagcagcggagctagaa
gagaagcaagatattaagaggttaatcttagagtacaacgaccgggaagaggaagaacat
aatggattaggctcccaaacgatgaattggatgcagacaggggggaatagagtccctact
cgggggaacaattgggaagcttcgggtgggaggagtggtgggttgcgtcatccccatcat
cgttatcctggtagtggcatgcattatagtagaaaaaaatga
DBGET
integrated database retrieval system
