Benincasa hispida (wax gourd): 120080502
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Entry
120080502 CDS
T07258
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03440
Homologous recombination
bhj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120080502
03460 Fanconi anemia pathway
120080502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhj03032
]
120080502
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120080502
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
120080502
DNA replication proteins [BR:
bhj03032
]
Eukaryotic type
DNA Topoisomerases
120080502
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
120080502
FA (Fanconi anemia) pathway
120080502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
120080502
NCBI-ProteinID:
XP_038891105
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Position
1:23114612..23156695
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AA seq
867 aa
AA seq
DB search
MVASTVLMVAEKPSIALSIASALSHGQMSTRKGSTDVHEFDGRFLGHHAHYKVTSVIGHV
FSIDFPAGFQDWKSTDPLDLFQASVIKTESNPKAHIRQHLSREARGCDCLVLWLDCDREG
ENICFEVIECTGFGGNEIRKKVYRARFSSVTEKDILKALDNLVQPNKNEALAVDARQEID
LKVGVAFTRFQTTFFQGKYGNLDSRLISYGPCQTPTLGFCVQRHLQITTFTPEKFWSVCP
YIMQNGYELNLDWERGKLFDCDVTAMFQKRVIEDGIAEVTEISEKQENKVRPSGLNTVNL
LKVASSALGFGPQIAMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLHTLMKNSEWGDY
VRMLLSDGYSKPRSGTDVGDHPPITPMCLATEDMLGRDAWRLYQYVCQHFIGSLSSDCKY
IRTKIQFSIAGELFNCTGSRVIVKGFTSIMPWLAVNEKKLPQFLKGEKIEVARVDLYQGN
TTPPDYLSESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRRLAPTNLGITLVRG
YQCIDPDLCLPDIRSFIEQQITLVAKGQADHSSVVQNVLQQFKQKYCYFVKKIDHMDALF
EAQFSPLADSGRALSKCGKCLRYMKFISSQPQRLYCGICEEVYYLPQKGAIKLYKELTCP
LDNFELLIFSLPGPEGKSFPLCPYCYNSPPFEGIDTLYGAAKTNPSSGASSKGMGMPCFL
CLHPTCRHSLITQGVCACPECSGTLVLDPVSAPNWKLNCNKCNCLVFLPQGAHRISTRNE
KCADCDSTIIEVDFNKKTTPLEGGATLFVGCILCDEFLHSLLEMKHGKSLFRGRGSRGRG
RGRGRGGRGRGRNSGRPMDPKMSFRDF
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggttgcttcaacggttcttatggtggcagagaagcctagcattgcgctctcaattgct
tctgcactctctcatggccaaatgtctacaagaaagggtagcacagatgtacatgaattc
gatgggagatttcttgggcatcatgctcattataaagtgacatcagtgatcgggcatgtt
ttcagtatagatttcccagctggatttcaagattggaagagcactgatcctttggatctt
tttcaagcttcagtgattaagacagaatcaaacccaaaggctcacatacgtcaacattta
agtagagaagcacgtggttgtgattgtttggttttatggttggattgtgatcgtgaagga
gaaaatatatgttttgaagttattgagtgcactggatttggtggcaatgaaattaggaaa
aaagtgtatcgtgcaaggttttcttccgttactgaaaaggatattctgaaggctttggat
aaccttgttcaaccaaataaaaatgaggcactggctgttgatgcacgacaagagatagat
ttgaaagttggagtcgcctttacacgatttcagactaccttttttcagggaaaatatgga
aaccttgattccagactcatctcctatgggccatgccaaactcccacgcttgggttttgt
gtacagcgtcatttgcaaataactacctttacgccagaaaaattttggtctgtgtgccct
tatattatgcaaaacggctatgaacttaatctggactgggaacggggcaagttatttgac
tgtgatgttactgcaatgtttcagaagcgagtaatagaagatggaattgcagaagtaaca
gaaatatcagagaagcaagaaaacaaagttcgaccctctggactaaacacagttaacctt
ctgaaggttgcttcaagcgcactaggatttggacctcaaatagcaatgcaacttgctgaa
cgattgtatacgcaaggtttcatcagctatccacgtacggaaagtacggcttatccttct
tcatttgacttcaaaggcactctacataccctaatgaaaaattcagaatggggtgactat
gtacggatgcttctatctgatggatacagtaaaccacgatcaggaactgacgtaggtgat
catcctccaattactccaatgtgtttagcaactgaagatatgctagggagagatgcttgg
agattgtaccaatacgtgtgtcaacacttcattgggtctctgtcttctgactgcaagtat
attaggacgaagatacagttttcaatagctggagaattattcaattgtactgggtcacgt
gttatagtaaaaggattcacctccattatgccatggttggcagtaaatgaaaaaaaacta
cctcagtttctgaagggagagaaaattgaagttgcaagagtggatctttatcaggggaac
accacgcctccagattatttaagtgagagtgagttgatttctctcatggagaagcatgga
ataggtacggatgcatcgatacctgtacacattaacaacataggcgagcgcaactatgtt
caggttcaagcggggaggaggttggctccaactaacttgggcatcaccttagttagaggt
tatcaatgtattgatccagatctctgtttaccagatattcgaagtttcattgagcaacag
atcactcttgttgccaaaggtcaagcagatcattctagtgttgtgcagaatgtattgcaa
cagttcaagcaaaagtattgctactttgttaagaagattgatcatatggatgctctgttt
gaagcacaattttctccccttgccgattcaggacgtgctttgagcaaatgtggcaaatgc
ctacggtatatgaagtttatttcttcccaaccacagcgtctgtactgcggtatatgtgag
gaagtttattatcttcctcagaagggagcaataaagctgtacaaggaactcacatgccct
ttggacaacttcgagctcttgattttttccttacctggtccagaaggaaagtcatttcct
ctttgcccatactgctacaatagtcctccatttgagggtattgacacattatatggtgct
gctaaaaccaatccaagttctggagcatcgagcaagggaatgggcatgccatgcttcctt
tgtctgcacccaacatgccgacattctttaataacccaaggagtttgcgcttgcccagaa
tgtagcgggacgcttgtcctagatccagtgagtgcacctaactggaaactcaactgcaac
aagtgcaattgtctcgtcttccttcctcagggtgctcataggatttcgaccagaaatgag
aaatgtgctgattgtgactctacaattatagaagtggacttcaacaagaaaacaacgcca
ttggagggtggagctacattgtttgttggttgcattctttgtgatgagtttctccattca
cttctggagatgaagcatggaaaatcattgttcagagggagaggttctagaggaagagga
agaggaaggggaagaggaggaagaggaagaggacgtaattcagggagacctatggacccg
aaaatgagtttccgagatttctga
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