Benincasa hispida (wax gourd): 120081309
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Entry
120081309 CDS
T07258
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120081309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120081309
03041 Spliceosome [BR:
bhj03041
]
120081309
03036 Chromosome and associated proteins [BR:
bhj03036
]
120081309
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120081309
Spliceosome [BR:
bhj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120081309
Complex B
120081309
Complex C
U2 SnRNP specific factors
120081309
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120081309
TFTC complex
120081309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
120081309
NCBI-ProteinID:
XP_038891993
LinkDB
All DBs
Position
7:31813783..31819093
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQRATGIVSAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI
FAAIELDYSEADQDSTGVAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLEHNNDSVKELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAI
GDDADVESSSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKIINLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSAAPESLLFLEVLASVGGEDGADHPASLFL
NAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVVLRGRRAILCLSSRPWLGYIH
QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGNFLRVFTIERLGETFNETVIPLRYTP
RKFVLQPRRKLLVVIESDQGAFTAEEREAARKECFEAAGAGENGNGTMEQMENGGDDEDK
DDPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQDNEGAFSVCTVNFHDKEYGT
LLAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAG
IGSVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWLTASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECILYGTVMGSLGALHAFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPTLPLDMQRKIADELDRTPG
EILKKLEEVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttacagtctcactttgcaacgagctaccgggattgtctcggctataaatgga
aatttctccggtgggaaaacgcaggagatagttgtggctagagggaaggtcctggatctc
attcgtcctgatgatagtggtaagatccaaactcttctttctgttgaaatctttggtgcg
atacgttctttagctcaattcaggcttactgggtctcagaaagattatattgttgttggg
tctgattcgggtcgaattgttattctggagtataataaagataagaatgtatttgacaag
atacatcaagagacttttgggaagtctggttgtcgccggatagttccggggcaatatttg
gctattgatcctaaaggaagggctgttatgattggggcatgtgagaagcagaaacttgtt
tacgtcttgaacagagatacagcagccaggcttactatttcttcgccactggaggctcat
aagtcacatacgatagtatattcaatttgtggaattgactgtggatttgacaatcctata
tttgctgcaattgagttggattactcggaggcggatcaggattctactggggtggcagca
agtgaggcccagaagcatttgactttctatgaacttgatcttggtctcaatcatgtctct
aggaagtggtcagaacctgttgataatggtgccaatatgcttgttactgttcctggaggt
ggggatggtcctagtggagtgttagtttgtgctgaaaattttgtgatttataagaatcag
ggacatccagatgttagagctgtcattcccagacgtgcagatttacctgctgagcgtggt
gtgcttatagtttcagcagcaatgcataagcaaaaaacaatgtttttctttcttttacag
acagagtatggagatatatttaaggttaccttggaacacaacaatgacagtgtcaaagaa
ctgaagattaagtattttgatacaattccagttacagcttcaatgtgtgtactgaaatca
ggatttttatttgctgcctcagaatttggaaatcactcactataccagtttcaagccata
ggggatgatgctgatgttgaatcttcctcggctactttgatggaaactgaagaaggtttc
caacctgtctttttccagcctaggagactcaaaaaccttgttaggattgatcaagttgag
agcttaatgcctattatggacatgaaaatcataaatctttttgaggaggaaacacctcag
atatttactctttgtgggcgaggtcctcgatcatctttgcgaatattgagacctggtttg
gccatcagtgaaatggctgtgtcagaacttcctggtgttcctagtgctgtttggactgtg
aaaaagaacatcaatgatgagtttgatgcatacattgttgtgtcatttgccaatgcaaca
cttgttctttctattggtgagacagttgaagaagttagtgacagtgggtttcttgacact
accccatcccttgctgtttctttgataggtgatgattctctcatgcaagtccatccaaat
ggtattaggcatattagggaagatgggcgtattaatgaatggagaactccaggcaagagg
accattgttaaggttggttctaataggcttcaagtggtgattgccctgagtgggggagaa
cttatttattttgaggtggacatgactggtcagttaatggaggtggagaagcatgaaatg
tctggagatgtggcttgcttggacattgccccagtacctgaaggaaggcaacgttcacgt
ttcctagcagttggttcttatgataacacaatacgaattctatcattggatcctgatgac
tgtatgcagattttaagtgtgcaaagtgtttctgcggctccagaatctcttctatttctt
gaagttttggcatcagtaggtggggaggatggtgcagatcatcctgctagccttttccta
aatgctgcattgcattctggggttttattcagaacagtagtggatatggtgacaggccag
ctttctgattctcgatcccggttcttaggattaagagcacccaaacttttttctgttgtt
ttgagggggaggcgtgcaattctttgcctctcaagtaggccttggcttggatatattcat
caaggccattttctattgactcctctatcatatgaaactcttgaatatgcctcctcattt
tcatcggatcagtgtgcagaaggtgtagttgctgtggctggaaattttttgagggttttc
accattgagagattgggagaaacatttaatgaaacagtcattccacttaggtacacccca
agaaagtttgtgcttcaacctaggagaaaactattggttgttattgagagtgatcagggt
gcattcactgctgaagagcgagaagctgctagaaaagaatgctttgaggctgcaggggct
ggggaaaatggaaatggcacaatggagcaaatggagaacggtggagatgatgaggacaag
gatgatcctttatctgacgagcattatggttacccaaaggcagagtctgaaaaatgggtt
tcttgcatccgagttcttgatcctagatcagccactacaacttgtctgctggagcttcag
gacaatgaaggggcattcagtgtttgtacagtaaatttccatgacaaggaatatggaacc
cttttagctgttggtactgcaaagggcctgcagtttttccctaaacggagtttagttgca
ggttatattcacatttatcgttttctggaggatggaaaatcccttgagcttttgcacaag
acacaagtggaaggtgttcctctcgctttagctcagttccagggaagattacttgctgga
ataggatccgtgctcagattgtatgatttggggaaaagaagattgcttaggaaatgtgaa
aataagttgttcccgaatacaattgtgtctattcagacatatcgtgatcgaatttatgtt
ggtgacattcaggagtcattccattattgcaagtataggcgggatgaaaatcagctatac
atatttgctgatgattctgttcctagatggcttacggcatcatatcatgtggattttgac
accatggctggtgctgataagtttggaaatatctattttgtgcggttaccacaagatgtt
tcagatgagattgaagaagatccaacaggtggaaagataaaatgggagcagggaaagctt
aatggggctcctaacaaagttgaggagatcatacaattccacatcggtgatgtggtcaca
tcattgcaaaaggcatctttgattccagggggtggagaatgcattttgtacggtacagtg
atgggaagcttgggggcattgcatgctttcacctcccgtgacgatgttgatttcttttct
cacttggaaatgcatatgaggcaggaacatccacctctatgtggaagagatcatatgggt
tatagatcagcttattttcctgttaaggatgtgattgatggggatctgtgtgagcagttc
ccaacccttcccctagatatgcagagaaagattgctgacgaattggaccgtactcccgga
gaaatactgaagaaacttgaagaagtacgaaataagattatttga
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