Benincasa hispida (wax gourd): 120081418
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Entry
120081418 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120081418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120081418
03012 Translation factors [BR:
bhj03012
]
120081418
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120081418
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120081418
Translation factors [BR:
bhj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120081418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
T2SSE
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
120081418
NCBI-ProteinID:
XP_038892188
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All DBs
Position
7:24855401..24865967
Genome browser
AA seq
1143 aa
AA seq
DB search
MHNFNRLPNFLLVLSKNIGCDLSINHGLAVRPLKLLLQSHSYSVNRVWRGSYHYAAEQFS
DDEYECDVENNTASSSVANIDEWKWKLSLLSRNEKDQEIVSRDNRDRRDFEQISNLAKKM
GLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSLQRRVEGLLQEHCDRIRLSSG
KASEISNDAKSIDEVTDVNMDECEDSYVDGSVMEKVLQRKSLRMRNMQRAWQESPEGRKI
LDFRRSLPAFKEKERLLQAIATNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSII
CTQPRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDR
NLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAPT
IHIPGFTFPVRAYFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNQITSLV
EDALDKSTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDIS
SLRDQLRAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPAQNVRKVVLATNMAEASITIN
DVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCFHLYPKCVFE
AFSEYQLPELLRTPLNSLCLQIKSLQVSSVGEFLSSALQPPEPLAVQNAIDFLKMIGAFD
EKENLTNLGKFLSMLPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDLA
GIAKARFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSMQTLQAIDSLRRQFNF
ILKDAGIVDLDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLLY
ANSVNARYDTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVHRGVQAGHLKMLN
GYVEFFMDSNLAECYLQLKEELDKLIENKLQNPGLDILKEGKYLVLSVQELVSGDQCEGR
FVFGRDSKKQASSNDKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKG
MQFVGKPKKNKQLAERDAAIEALAWLTHTSDNGANSDDDSPIDVTDNMLKLLGKRRRSKG
RPG
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgcataatttcaaccgacttccaaattttctcttagtattatcgaagaacataggctgc
gacctgtctatcaatcacggcctcgccgtgaggccactgaaactgcttctacagtctcat
tcctattctgttaaccgagtctggcgaggttcgtatcattacgctgcggagcaattctcg
gacgatgagtacgagtgcgacgtcgagaacaatacggcctcatcttctgtggccaacatc
gatgagtggaaatggaaacttagcttgctatctcgaaatgagaaggatcaagagatcgta
tccagagataacagagacaggagagactttgaacagatctcaaaccttgccaaaaagatg
gggctctattgttcaatgtatggaaaagtggtagttgcaagtaaagttccccttcctaac
taccgacctgatttggacgataaacgaccacaaagggaggttgctattcctttaagtttg
caaaggagggtggaaggtttactacaggaacattgcgatcgcattcggttaagttctgga
aaggctagtgagatttcaaatgatgccaagtccattgatgaggttacagatgtgaatatg
gatgaatgtgaagattcttatgttgatgggtctgtgatggaaaaggtacttcaacggaag
agtttacggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaagata
ctggatttcaggaggtctctgccagcattcaaggagaaggaaaggttactccaggcaata
gcaacaaatcaggtagtagttatatcaggagaaactggatgtggtaagactacacaactt
cctcagtacctattagaatcagaaattgaaactggtcgaggagcattctgtagcataata
tgcactcaacctcggaggatctctgctatggctgtttctgaaagagtatccatagagcga
ggagaaccccttggtgaaacagttggctataaagttcgattagaaggtatgaaagggaaa
aacactcatctgttgttttgcaccagtggtatattacttcggaggcttctaagtgatcgt
aatctaaatgggattacccatgtctttgtggatgaaattcacgagcgaggcatgaatgaa
gattttctgttgattgtcttgaaggatctccttccacgccgccgggatttaagattaatc
ttgatgagtgccactttaaatgctgaactcttttccagttattttggaggagcaccaact
attcacatcccaggttttacatttccagtgagggcatactttttggaagatgtgttagaa
atgactggctataagttgacatctttcaaccaaatcgatgattatggccaagagaaaatg
tggaaaacacagaaacaattagctccacgaaaaaggaaaaaccaaatcacttctcttgtt
gaggacgctcttgataaatcaaccttgggaaattatagttccaacacacgagattctctc
tcatcctggatgcctgactgcataggttttaatcttatcgaggctgttttgtgccacata
tgtcgtaaggaacgacctggtgcagttttagtattcctgactggatgggaggatatcagc
agtttgagggatcaattgagagctcatccacttttaggagatccaaacagggttttgctt
ttgacatgccatggttcaatggcaacatctgaacagagactcatatttgagaaacctgct
cagaatgtccgtaaagtagttcttgccactaatatggcagaggcgagcatcacaataaat
gatgttgtttttgttattgactgtggaaaagcaaaagaaaccacgtatgatgcattaaat
aatacaccttgtctgttaccttcatggatatcgcaggcttctgctcggcaaagaaggggc
cgggctggccgtgttcaaccaggaaaatgttttcatctttacccaaaatgtgtttttgaa
gcattttctgagtatcaacttcctgaacttttgagaactccattgaattccctctgcctt
caaataaaaagtttgcaggtttcaagtgtaggagaattcttgtcatctgctctgcagcca
ccagaacccttggctgtacaaaatgccattgattttttaaagatgatcggggcatttgat
gagaaggaaaacttgacaaatcttggaaaatttttgtcaatgcttcccgttgaccctaag
ctaggaaaaatgctgataatgggtgctatctttcattgctttgatccaatcctcactata
gtttccggccttagtgtcagagatccttttcttctacctcaggacaaaaaagacttagct
gggatagccaaggctagattttctgcaaaggactacagtgatcatatggcgcttgttcgt
gcttatgagggatggaaagatgcagaaagagaagggtcatcctatgagtactgctggagg
aacttcctttctatgcaaacacttcaagcaattgattcacttagaagacagtttaacttc
attttaaaggatgcaggaatagttgatctagatggtagcacgagtaacaagttaagccac
aaccagtctcttgttcgtgcgatcatttgttctggtctctttccaggcgtagcatctgtt
gtgcacagagagacttccatgtctttcaaaaccatggatgatggccaggtcttgctgtat
gcgaattctgtaaatgcgcgttatgatacaattcccttcccgtggctggtctttggcgag
aaagtgaaggtcaatacagttttcttacgagattctactggcatatctgattcaatgctg
attctttttggtggagcagtacatcgtggtgtacaggctggtcatttgaaaatgttaaat
ggctacgttgaattctttatggattctaatttggcggaatgctatttgcaactcaaggaa
gaacttgataaacttattgaaaacaaacttcagaacccgggactcgatattctcaaagaa
ggcaagtaccttgttctttctgttcaagagttggtatcaggtgaccaatgcgaagggaga
tttgtctttggtcgggacagtaagaagcaagcgtctagcaacgacaaattcacaaaggat
ggcaccaacccaaagagcttgctacaaaccttgctaatgagggcaggacattcccctcca
aagtacaaaaccaagcacctcaagacaaatgaattcagggcgctggtagagtttaagggt
atgcaatttgtgggtaagcctaagaaaaacaagcagcttgcagagagggatgctgctata
gaggctctggcctggttgacacacacctctgacaatggtgcaaattcagacgatgactct
cctattgatgtaactgacaacatgctaaaacttcttggaaaacgaaggcggtctaaaggc
cgccctggttaa
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integrated database retrieval system
