Benincasa hispida (wax gourd): 120081436
Help
Entry
120081436 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120081436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120081436
03012 Translation factors [BR:
bhj03012
]
120081436
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120081436
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120081436
Translation factors [BR:
bhj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120081436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NACHT
Dicer_dimer
T2SSE
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
120081436
NCBI-ProteinID:
XP_038892223
LinkDB
All DBs
Position
7:complement(39339156..39352256)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKDRTPSSNGAVYVPPHIRLRSVVTPSNTSSPVSALDCKLKAAPASLLDSGTTGPPCLRS
QEQLPTGNSRFNSLQYDSAYNDAAPVESWTCNFECSHQSGFPPSVNIDLWKRKLALLLRD
KEKQELISREKKDRQDFEEIAALASRMGLYCHLYAKVAVFSKVPLPNYRFDLDDRRPQRE
VSLPPGLLRRVDEHLGEFLSQKSMCKGFQDISVSRSSSSGSIATDEGLFEQPEPQASSKA
VMDKILWRRSSHLRDQQQAWQSSLEGREMLEFRKNLPAYKEKDALLATISQNQVIIISGE
TGCGKTTQVPQFILESEIESLRGVVCNIICTQPRRISAMSVSERVASERGEKLGESVGYK
VRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLL
PRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQ
IDDYGQEKTWKMSKQAPRKRKTQIASTVQDALMAADFKEYSLQTQESLSCWNPDCLGFNL
IEYLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPSRVMLLACHGSMASSEQ
RLIFTEPDKGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISK
VSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLKLGSISE
FLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFN
CLDPILTVVAGLSVRDPFLTPLEKKDVAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNFG
GYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICYGL
YPGVCSVVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDST
AISDSMLLLFGGSISKGDHEGHLKMLGGFLEFFMKPDVAETYQKLRMELEEFIQMKLLNP
KMDLHSHHELLSAVRLLISEDQCEGRFIFGRQILQHPSKTSAPAAAPTAVSRIESGPGGD
NSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEA
LEWLMGANQTGHDYVNQMSMMLKRSKKDHN
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgcactccttcctccaatggcgctgtttacgtccctcctcacatccgtctc
cgctccgtcgttactccttctaatacttcctctcctgtttccgctcttgactgcaagctt
aaggcggctccagcctcgctgctcgattcaggaactactggtccgccttgcctgcgatct
caagaacagcttccaacggggaactcgcgttttaattccctgcagtatgattcggcctac
aacgatgcggctcccgtagagagttggacttgtaatttcgagtgttcgcatcaatcgggt
tttccaccttctgtcaacattgatttgtggaaaaggaagttagcattacttttacgtgac
aaggagaagcaagagttaatttcaagggagaaaaaagatagacaagactttgaggaaata
gctgctttggcaagtagaatgggactttattgccatctatatgccaaagttgctgttttt
agtaaggttccattgccgaactacagatttgatttggatgatcggcgtccacagagagag
gtctctttgcctcctgggttgcttagaagagttgatgaacatctgggagaatttctctct
caaaagtctatgtgtaaaggttttcaagatatctccgtctctagatcaagcagcagtggt
agcatcgctacagatgaagggctttttgagcaacctgagccacaagcatctagtaaggct
gtgatggataaaattctttggaggagaagttcacatctgcgtgatcaacagcaggcttgg
cagtcatcacttgaaggaagggaaatgctggaatttcggaaaaatctccctgcttacaag
gagaaggatgcattattggccacaatctcacagaatcaggttattattatttcaggtgaa
actggttgtggcaagactacgcaagttccccagttcattttggaatcagaaatagaatca
ctccgtggggttgtttgcaacatcatatgtacacagccaagacgaatatctgctatgtct
gtctctgagagagttgcttctgaaagaggggagaaattgggtgaatctgttggttataaa
gtgcggttggagggtatgaaagggagggatactcatcttcttttttgcaccacgggtatc
ttgttgagaagattgttggttgatagaaatttgaaaggcataactcatgttattgttgac
gaaattcatgagcgtggaatgaacgaagattttcttctcattgtcctgaaagatctcctt
cctcgtcgaccagaattgaggttgattctaatgagtgcaactttagatgcagaacttttc
tcatcctactttggtggggctcaaataattcacattccgggattcacacaccctgtccga
actcattttctggaggatattctagaaatgacgggttacagattaactccatacaatcaa
atagatgattacggtcaagagaagacgtggaaaatgagcaaacaagcaccaagaaaaagg
aaaacccagattgcctccactgttcaggatgcacttatggcagctgattttaaggagtac
agtcttcaaactcaggagtctttatcgtgttggaatccagactgtcttggttttaatctc
atagaatatcttctagtcaggatatgtgagagcgaaacaccgggagctattcttgttttt
atgactgggtgggatgacatcagttctctgaaggagaaacttcagtctcatcctttatta
ggagatccaagtcgtgtcatgttgttggcatgccatggttcaatggccagttcagagcag
aggttgatatttactgaacctgacaaaggagtgaggaaggtagtgcttgcaacaaatatt
gctgagacaagtatcacgattaatgatgttgtgtatgttctcgactgtggaaaggccaaa
gaaacatcgtatgatgctttaaataacactccttgtttgcttccctcttggatatccaag
gtttctgctcaacaaagaagaggaagggctggccgtgttcaaccaggagaatgttaccat
ctataccctaggtgtgtgtttggttctttctctgagtatcagctaccagaaatattgaga
acacctttacagtccctctgcttgcaaataaaaagcttaaagctgggaagtatatctgag
tttctatccagggctttgcagtcaccagagctacttgcggttcagaatgctattgaatat
ttgaagatcattggagcatttgatgagagtgaaaatctaactgttttaggtcgttatttg
actatgctcccaatggaacctaaactaggaaagatgttgatagtaggtgctatcttcaat
tgtttggatccaattttgaccgttgttgctggccttagtgtgagagacccttttctaacg
ccacttgagaagaaggatgttgcagaggctgcaaaatcccaattttcacaagatcatagt
gaccaccttgctattatccgggcttatgggggatggaaagaagctgagaggaactttggt
ggatatgacttttgttggaagaactttctttctgtacaatcgatgaaggctattgattca
ctaaggaaggagtttttttctttacttagagatactggcttggttgatgggtactcagac
acctacaatgcttggagtcttgatgaacaactcatacgtgcagttatttgctatggcctc
tatcctggagtttgctccgttgtgcataatgagaagtcgttttctctcaaaactatggag
gatggccaggtgcttctctattcgaactcagtcaatgctcgagagtcgagaattccgtat
ccatggatagttttcaacgagaagattaaagtgaactccattttccttcgagattcaaca
gctatctctgactcgatgctgcttctctttggaggaagcatctcaaaaggtgatcatgag
ggacacttgaaaatgttgggtggttttttggaattttttatgaaacctgacgtagcagag
acatatcagaagttgagaatggaacttgaagagtttatacagatgaagctactaaatccg
aagatggacttgcactcccaccatgagctcctatctgcagtacgcttgcttatttcagaa
gaccagtgtgaaggtcgattcatttttggccgccaaatccttcagcatccttccaagaca
tcagctcctgcagcagcaccaactgctgtttcaagaattgaaagtggacctggtggtgac
aattctaagagtcagctccagactttactcacgagggctggatatgctgctcccatctat
aagactaagcaattgaagaataatcaattccgagcaaccgtggaatttaatggactgcaa
atcatgggacaaccttgtaccaacaaaaagaatgcagaaaaggatgcagcagctgaggct
cttgagtggttgatgggtgcaaatcagacggggcacgactatgtcaaccaaatgtctatg
atgctaaagaggagcaagaaggatcataactaa
DBGET
integrated database retrieval system
