Benincasa hispida (wax gourd): 120081534
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Entry
120081534 CDS
T07258
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03410
Base excision repair
bhj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120081534
03450 Non-homologous end-joining
120081534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120081534
Enzymes [BR:
bhj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120081534
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
120081534
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
120081534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
HHH_5
BRCT
NTP_transf_2
Cdd1
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
120081534
NCBI-ProteinID:
XP_038892425
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All DBs
Position
7:46800506..46805080
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AA seq
521 aa
AA seq
DB search
MAPKRRKSENLSGDPHGMFEGMIVFLVEKGVQARRLQIWKQKLVQMGASIEERLSKMVSH
IFAASSDALLQKVNGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVRLDEDVRDKP
QLFISKKLKLSPNNSEAVSSENGGDSDASTLVTKTATGLEDSKLSIDQTVTSPRTSDSKN
SNTSLSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFKIESSDRVK
HLPAIGKSFQDHIQEIVSTGKLSKLEHFEADEKVRTISLFGEVWGIGPATALRLYEKGYR
TLDDLKKEESLTHAQKLGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVDILCGGSF
RRGKSSCGDMDIVITHPDGKSHRGFLPKYIKHLKDMKFLREDLIFSTHSEEGTDSGVDTY
FGLCTYPGRELRHRIDLKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGFRLDDTGLYP
STQGSGGKRGARGTATLKFDTEKEIFEFLGFPWLEPHERNL
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaaacgaaggaaaagcgaaaatctttctggggatccacatggaatgtttgag
gggatgattgtcttcttagtggaaaagggggtgcaagcccgccggttgcagatatggaaa
cagaagttggttcaaatgggtgctagtattgaggagcgtttatcgaagatggtcagccat
atatttgctgcgagctcggatgctcttctgcagaaagtgaacggtgcgcgtttggcgcgc
tttaaaggaaaggttctttcgtaccagtggctggaagacagcttaagttcaggggagaag
gcgtcggaggatttgtacactgtaaaagtgagattagatgaagatgtaagagataagccc
caactgtttatttccaaaaaactaaaattgtcccccaacaattcggaagcagtaagttct
gaaaatggtggagattcagatgcttcaactttggtaacaaagactgccacaggtcttgag
gactccaaattgagcattgatcagacggtaactagtccaaggacttctgattctaaaaat
agcaatacatctctgtcatacagtccaccagatatgaataagaacataactgagattttt
ggaaaacttatcaacatatacagagcattgggtgatgaacgaaggtcgtttagctattac
aaggcgattccagtcattgagaagctaccttttaaaattgagagcagtgatcgggttaaa
cacctgccagccataggaaagtcattccaggatcatattcaagagatagtgtcaactgga
aagctatcaaaattggagcactttgaggcagacgaaaaggttcggacaatctcactgttt
ggggaagtatggggtattggcccagccacagctttgcgattgtatgagaaaggatacaga
acacttgatgacttgaaaaaggaggaatcgttaacccatgcacagaaattagggttgaaa
tattttgatgatattaaacaaagaataccccgcaacgaggttcaggacatggagagcctt
ctaaagaaggctggggaagatgttttaccaggggttgatattctgtgtggaggatcattt
cggcgagggaagtcatcctgtggagatatggacattgtaatcacacatcctgatgggaaa
agccatagaggttttctaccaaaatacataaagcatttaaaagacatgaagtttttaagg
gaggatctgatattcagcacgcacagtgaggagggaactgactctggtgttgacacgtat
ttcggcctttgcacgtatcctggaagagaattgcggcaccgaatagatctcaaggtgtat
ccaagagacatatatgcatttggattgatagcgtggactgggaacgacgtactaaacagg
agactgagattactagcagaatcaaaaggatttaggctggatgatactggactttatcca
tctacccaaggatctggtggtaaaaggggtgctagaggaaccgcgactttgaagtttgat
actgaaaaagaaattttcgagttccttggatttccatggctggaacctcatgaaaggaat
ctatga
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