Benincasa hispida (wax gourd): 120082018
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Entry
120082018 CDS
T07258
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
bhj04812
]
120082018
Cytoskeleton proteins [BR:
bhj04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
120082018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
eIF2A
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_RIG_1st
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_WDR19_1st
PROPPIN
VPS8_N
Motif
Other DBs
NCBI-GeneID:
120082018
NCBI-ProteinID:
XP_038893154
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Position
7:complement(35500004..35509130)
Genome browser
AA seq
845 aa
AA seq
DB search
MTTKRAYKLQEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLWAIGKPNAILSLTGHTS
GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD
FKCHEGQVQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR
TLLCGLHESLKVFSWEPIRCHDGVEVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDITR
TEPYAINNVNRLNGRSEPKSSSNLPQQNENNTKAGFGGLSVSQTSDPLLKETKTLGRLSV
SQNSDVVKDPKSLSSTGNGPSTPQKINLNAGPKTNPVSSVTVPSAVVPKRNSVKATSTFS
NPIFNKSDVIPVIVPRTSSRHEQDDSRKEFDVAGRAVPVPRTNSRHEQDDSRKELDVAGR
VMPLSRSNSRHEQDDSRKDFDVAGRAVPVPLLSKTTDNRRFLNGRDEVGNPTISVLSESR
GLKANDMSTMDNRNSLHDIGSIQGVSAPQKIVKEERYIGSGKNETESKETTANYKHEDDP
RGHKISRDTSFPEATKGGRLRSHVDWEKRERSNFSRLTYNASPGRAAALENIPLNNGRGY
RRSPEKETVSPASDEDTIVDVLQQHDQFINSMQSRSAKLQAVYRYWERHDIKGAVSAMEK
MADHAVAADVISIMTNRIEVVTLDICSCILPVLSGLLESDMDRYLDISMEMLVKLVRTFG
SVIYSTLSATSSVGVNIEAEQRLERCNLCFIELEKVKRCLPALIRKRGSVAKSAQELNLA
LQEFQ
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaacgggcgtacaagctacaagaatttgtggcacattcttccgctgtcaat
tgcctgaagattggaaggaagtcatcccgtgttcttgtcacaggaggagaagacttcaaa
gtcaatctatgggctattggtaaacccaatgccatactgagtttgactggccatacgagc
ggaatagattctgtaagctttgactcatcagaagtgttggtagctgcaggggctgccagt
ggcacaatcaagctttgggatttggaggaggctaaaattgttcgaacgcttactggtcat
agatccaattgcatttctgtggattttcatccctttggggaattttttgcttctgggtcc
ttggatacaaatcttaagatatgggatatccggaagaaagggtgtatccacacatacaaa
ggtcacactcgaggagtcaatgcaatcagatttactcctgatgggcgttgggttgtatct
ggtggagaagacaacacagtgaagctctgggatttaactgctggaaagttgttgcatgat
ttcaagtgtcacgagggtcaggttcagtgtatagattttcaccctcatgaatttttgcta
gcaacaggttcagcagataagacagttaaattttgggacctggaaacctttgagttgatt
ggttcagctggacccgagaccagtggagttcgttgtttaacgtttaatccagatgggagg
acactgctttgcggattgcatgaaagtttgaaggttttttcatgggaaccaattagatgt
catgatggtgtggaagttggttggtctaggctgtccgatcttaatgttcatgaggggaaa
cttcttggttgttcatacaatcagagctgtgttggagtgtgggttgtagacattacgcgc
acagagccctatgcaattaacaatgttaacagactaaatggtcgatcagaacctaaatcc
agcagtaatctaccacagcaaaatgagaacaataccaaggctggttttggtggattgtcg
gtatcacaaacttctgatccactattgaaggaaaccaaaacattgggaaggttgtcagtt
tctcaaaattcagacgttgtcaaggatccaaaatctttgtcatccacaggaaatggacca
agtactcctcaaaagatcaatttaaatgctggcccaaagactaatccggttagctcagta
acagtacctagtgcagtggtgccaaagagaaactccgtgaaggctacttcaacattcagc
aacccaatcttcaataaatcagatgtgatacccgtaattgtacctaggacaagttcaagg
cacgagcaggatgattctagaaaggaatttgatgttgctggaagagcagtgcctgtacct
aggacaaattcaaggcatgagcaggatgattctagaaaagaattagatgttgctggaaga
gtaatgccactgtccaggtcaaattcaaggcatgagcaggatgattctagaaaggacttt
gatgttgctggaagagcagttccagtaccattgctatcaaaaactactgacaataggagg
tttctaaatggtagagatgaagttggtaatccaaccatctccgtcctttctgaatccaga
ggcttgaaggctaatgacatgagcaccatggataataggaattccttgcatgacattggt
tcaattcaaggagtatctgctccacagaagattgtgaaagaagaaagatatattggatct
gggaagaatgaaacggaatcaaaagagacaacagcaaactacaaacacgaagatgatcct
cgaggccataaaataagcagggatacatcttttcctgaagctacaaaaggagggagattg
cgttcacatgtagattgggagaaaagagagagatcgaattttagccggctaacatataat
gcctcccctggaagagcagctgcactggaaaatattccattaaataatgggagaggttat
cgtcgatctcctgagaaagaaacagtatcacctgcaagtgatgaggataccatagtagat
gttctacaacaacatgatcaatttatcaactcgatgcaatctcggtcagcaaaattgcaa
gccgtctatagatattgggaaagacatgacattaaaggggcggtttctgcaatggagaaa
atggctgatcatgcagttgctgccgatgtaattagtattatgaccaatcgaattgaagtt
gtcaccctggatatctgcagttgtattctgcctgttctttctggcctccttgaaagtgac
atggataggtatttagacatttctatggaaatgctagtgaagctggtgaggacgtttggt
tcggtgatctattcaacgttatcggcaacatcatctgttggagttaacattgaggcagag
caaaggttggagcgatgtaatctctgcttcatcgagcttgaaaaagttaagcgctgcctg
ccagcccttataagaaaaaggggatcagtagcaaagtcagcacaggagttgaatcttgca
ctccaggaatttcaatga
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