Benincasa hispida (wax gourd): 120082206
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Entry
120082206 CDS
T07258
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120082206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120082206
Spliceosome [BR:
bhj03041
]
Complex C
Other components
Step II factors
120082206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT140_1st
DUF3886
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
120082206
NCBI-ProteinID:
XP_038893410
LinkDB
All DBs
Position
7:complement(47680243..47683634)
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AA seq
581 aa
AA seq
DB search
MDLLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKP
IDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYN
TFHKYGYAADPSASAGNNYIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMNENEDVE
EDLNTAEVDNPATDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKG
EVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFP
KHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKY
WDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHL
GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAA
QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK
TCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccagtcatacacagatcaaaacgacgatgacggaagccctaaacagctt
acatcttcaccagaagcctctccgcctcggcttctcccctccaaaacctcggcgcctaag
gtcgatgatacaatgttagccctcacggtggccaacgccaaccagaccctttcgaagccg
atagacccaactcaacatctcgttgccttcaaccccacttacgaccaactctgggcgccc
atttacggcccatctcatccctatgccaaggatggcattgcacaaggcatgcgaaaccac
aagctaggtttcgtggaggatgcgtccattgaaccatttgtcttcgatgagcagtacaac
actttccataaatatggatacgctgctgacccatcagcttctgctgggaacaattacatt
ggggatatggaggctttgcagaagaatgatgccatatccgtgtataacattccacagcac
gagcaaaagaagcggaagattgagaaaaagaaagaaatgaatgagaatgaagatgtagaa
gaggacttgaacacggctgaagttgataatccagccactgatgtgtggttgatgaagaat
aggaagagtccatggtctggaaagaaggaaggtcttcaaactgagctaactgaggagcaa
aagaaatatgcagaagagtatgcaaagaagaaaggtgaagagaaaggtggtgagaaggga
gaagttacagcggataagagtacttttcatggtaaagaggagagggattaccagggtaga
tcttggattgcacccccgaaagatgcaaaggctacaaatgatcattgttatataccaaaa
agattggtgcatacatggagcgggcacacaaagggtgtatctgctattaggttcttccct
aaacatggccatttgattctttctgctggtatggataccaaggttaagatatgggatgtg
ttcaattctggtaaatgtatgagaacctacatgggtcactctcaggcagttcgggacatt
tcattttgtaatgatggatctaagtttttgactgctggatatgataaaaagattaagtat
tgggatacagaaacagggcaagtgatatcaaccttctccaccgggaaaattccttatgta
gttaagcttaatcctgacgatgataagcagaatatcttgctggcagggatgagtgataag
aagatcgttcagtgggatatgaacacaggacagattacacaagagtatgatcaacattta
ggagcagtgaataccattacatttgtagacaataataggaggtttgttacatcaagtgat
gacaagtctctccgtgtttgggaatttggaattcctgttgttattaaatatattagtgag
cctcacatgcattccatgccctccatttctgtacatcccaatactaattggctcgcagca
cagagtttagacaatcagattcttatttatagcactagggagagatttcagctaaacaag
aaaaagaggtttgctgggcacattgtggcaggatacgcttgtcaggttaacttctctcca
gatgggcgttttgttatgtctggtgatggtgagggtaagtgctggttttgggactggaaa
acctgcaaggtattcagaactctcaagtgtcacgaaggtgtatgcattgggtgtgagtgg
catccattggaacaaagtaaagtagcaacgtgcggctgggatgggctgataaagtattgg
gactag
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