Benincasa hispida (wax gourd): 120082592
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Entry
120082592 CDS
T07258
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03013
Nucleocytoplasmic transport
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120082592
03015 mRNA surveillance pathway
120082592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120082592
03041 Spliceosome [BR:
bhj03041
]
120082592
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120082592
Spliceosome [BR:
bhj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
120082592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
120082592
NCBI-ProteinID:
XP_038893762
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Position
8:complement(19057676..19064890)
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AA seq
905 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKTQKFPAELDQLVDMTKVKMDVIRPWIATRVTELL
GFEDEVLINFIYGLLDGKEVNGKEVQIQLTGFMEKNTVKFMKELWILLLSAQKNASGVPQ
QFLDAKEEEIRKKKAETDFLANEIQKKREKENREIEEQRSKNMDDGAEKVSNSVLEPMSK
NVRSRAMRNHPEDEEVAEKRNGVRGRSSDRHESRSLSRSPQRRRRSFSRGRLSNSPRRRD
HRDSFSPRHRSSHSRRRSRDTSHRKSLSPAMRQLRSPSQHSSPSPHRKSPYRSSSPVQRL
SSSPVHRRSPSLDKHNRSPSPTGHRRSLSPIRRRHSPSPVRRRRLPSPKWYRRSPSPEWR
RRSPSPGRRRRSPSPGRRRSSPSLGRRRRSPSPGRRHRSPSPIRRRRSPSPIRRRRSPSP
PRRHRSPSPYRRKSPSYVRRRRSPSPSHRRRLPSLERYRRSPSPIKSHKSRSPVRRPMSP
SPSPVRKLDRSSPLHHRRTPSPQERRSPSTSLSKSPPLPQRSSPGHRKRSSPSQHSHRST
YDRSYSSEEQGNLSPVKVKSAHQRRSLSQSPMDRSRNVQTSSASRLPSRSLRSPQRDVRE
LNNSNNRSRASSSSLERSPAPANSPPVTRSASDDRRLSSPRSRAKQHRRDNHSTRAEEEE
ATYTRESENLESGSSLRKSLNSSIVGKMKDSLADVKVPSPGSNKHSRREVPGSPDQQKSS
SSHKEPSLVEEQQLSYSREGVKHDEKSYSRRSKAKETEPSSVENNHNRSEGSDSDLEESY
KRKTGSKEKKRHRKSDRRDTSSDSEDSYDTELERKEARRRKKEERRLRKEKKRQKREERR
RKKEERRAEKTKAKNLSDDYSDDDRVAKEGSYHSDGADEAEHRRLEIELRKKALESFNAR
KGTRS
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcgggtttttccggggtacgtctgcggaccaagacactcgtttttcgaacaag
caagcaaagctgttgaagacacaaaagttccctgctgaactagaccagttggtggatatg
acaaaggtgaagatggatgttatcaggccgtggattgctacgagggtgactgagcttctt
gggtttgaagatgaagttcttattaactttatatatggccttttggatggcaaggaagta
aatgggaaggaagttcaaatacaactcactgggttcatggaaaagaatactgtgaagttt
atgaaagagctttggatactacttctcagtgcccagaagaatgccagtggtgtacctcaa
caatttttggatgccaaagaagaagaaattaggaagaagaaggcagagacagattttctt
gcaaatgaaattcagaaaaagagagagaaggaaaatcgagaaattgaggagcagagatcg
aagaatatggacgatggggctgaaaaggtgtccaattctgttttggagcctatgtcaaag
aatgtgcgctcaagggctatgagaaatcatccagaggacgaggaagtggctgaaaaaaga
aatggtgttagggggagaagcagtgatagacacgagtcaaggagtctgtctcgatcacct
caacgaagacgacgttctttttcacgaggaagattgtctaacagtccacggcgaagggac
catcgtgattcattctctcctcgacatagatcatcacattcgaggagaaggtccagagat
acttcacatcgtaaatctctttctccagcaatgcgccaattgcgttctccttctcaacat
agttcaccatctcctcatcgcaaatcaccatatcggtcatcttcgccagtgcaacgtcta
tcatcatcacctgtgcatcgaaggtcaccatcacttgataagcataatagatcaccatca
cccacagggcatcgcaggtcactatcaccaattagacgtcgtcattcaccttcacctgtt
cgacgtcgtagattgccatcacctaaatggtatcgtagatcaccatcaccagagtggcgt
cgtaggtcaccatcaccaggacgacgtcgtaggtcaccgtcaccaggacggcgtcgtagc
tcaccgtcactaggacggcgtcgtaggtcaccatcaccaggacggcgccataggtctcca
tcacctatacgacgccgaaggtctccatctccgatacgacgtcgaaggtcaccatctcca
ccacgacgtcataggtcaccatctccatatcgtcgaaaatcaccttcctatgtgcgtcgc
cgtagatcgccatctccatcacatcgtcgtagattgccatctctggagcgttaccgtagg
tcgccctcacctattaaaagccacaagtcccgttctcctgttcgacgacctatgtcacct
tcaccatcaccagtacggaaattggataggtcatcaccacttcatcatcgcagaacaccc
tcacctcaggaacgtagatctccatcaacctctttaagcaaatctcctccattgccacaa
aggtcatctccaggacatcgcaagagatcaagtccttctcaacacagtcatagatccacg
tatgatcggagttattcatcagaggagcagggaaacctatcgcctgtcaaagtaaaatct
gcacatcagaggaggtctctgtctcaatctcccatggacagaagcagaaatgttcagaca
tcttcagcatcccgactaccttccagatctttaagatcgccacaaagggatgttagggaa
ttgaataattccaataacagatcacgagcttcatcatcgtctttggagaggtctccagcg
ccggcaaattctccaccagttacaaggagtgctagtgatgataggaggttaagttctcca
cgatcacgggcaaagcagcatcgtcgtgacaatcattcaacaagggcagaggaagaagag
gccacctacactagggagagtgagaatcttgaatctgggtcttcattgagaaaatcactg
aattcttcaattgtcggtaagatgaaagattctcttgcggatgtcaaagtcccttcacct
ggaagtaataagcattctcgacgggaggtgcctggtagtcccgatcagcaaaaatcttca
tcatcacacaaagaaccttcacttgttgaggagcagcagctgtcatattcaagagaaggt
gtaaaacatgatgaaaaaagctactcacgtcgaagtaaggccaaggaaactgagccttcg
tcagtcgaaaataatcataaccggagcgagggctcagattctgacttggaggaaagctat
aagcgtaaaactggaagtaaggagaagaaaagacacagaaaatcagacaggcgtgacact
tcttccgactctgaagacagctatgatactgaattggaaaggaaggaggccaggaggaga
aagaaggaggagaggaggttgcggaaggagaagaagcgccaaaaacgtgaagagcgacgg
cgcaaaaaggaagagcggcgtgcagagaagacgaaagctaagaacctcagtgatgattac
tcggatgacgatcgagttgcaaaggaagggtcttatcacagcgatggtgcagacgaggct
gagcacagaaggctagagatcgagttaaggaagaaggcactggaatcattcaatgcaagg
aaagggacaaggtcctga
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