Benincasa hispida (wax gourd): 120082807
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Entry
120082807 CDS
T07258
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120082807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120082807
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120082807
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120082807
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120082807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Ribonuc_2-5A
VHS
Motif
Other DBs
NCBI-GeneID:
120082807
NCBI-ProteinID:
XP_038894058
LinkDB
All DBs
Position
8:8581222..8593022
Genome browser
AA seq
1087 aa
AA seq
DB search
MTPFMESEKLLISRGNPRNSAYPSDRQLPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRD
DEFRVSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLIC
ARILEVPVEQKLPSLYLLDSIVKNVGQEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLF
GTWATVFPPSIIRKIEAQLSQLTAQESSSLTSSRASESPRPTHGIHVNPKYLRQLEHSVV
DKQIHDARGVSALKVHDKKLASGYEEYDYDHAEVLEHGGAQAFHLRSMAHDSFALGTNKA
NIKLAKSSPSSRIGHNRPLQSAGDELEAVRASPSQNVYDYEGSRMIDRIEDTNKWRRKQY
PDDNLNGLESTSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSINGIDNKVT
PVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPSVPPSRFVTRTGFERSNAMSIEPGMRS
NWSSQVQLPTIDSSMVIEDVVQSTPDIWNMHNHISQTSQNLMNNKGAGRNFQTPLLGRGI
ALSGGEKMSPFADKLLTNDALHRPTTIASRLGSSGLDSSMELQSIVQSMGPRHPLNLPNS
CPPSRPPIFPVPRHNKSPFESLNGGNSFINRANRSFLPEQQMNNMRNKELSLTTKLPQVG
NQHTGHIPLTRGNQLQAIPLKPQFLPSQDMQDNLSASVVPPALPHLMAPSLSQGYISQGH
RPAISECLSSSAPIGQWNLPVHNSPSNPLHLQGGPLPPLPPGPHPTSIPTIPIPQKAGSL
VPGQRPGTEFSGLISSLMAQGLISLNNQPSVQDSVGLEFNPDVLKVRHESAITALYADLP
RQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAV
PGFLPPEVIVEKKDDEELAVPADDDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDG
QTAGMDRSQLGPIVHAKCRTETNVVTSESFEQEEQGVCLYLFCFFPLAPCYLRVPFALSC
GCLLMYTRCFLICKILCSSKLTLLIFCCRELVKRVIEENDCGASLNGFLYSRCSLYKFFP
HDRLFSQ
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgacccctttcatggaatcggaaaagctcttaatttcacgaggaaaccctagaaattca
gcatatccatccgaccgccaacttcccactaccagcggcaggactatgcccaatgagttg
ccacaaaagcctcccccttctatagctcaccggtttagagctcagctaaagcagcgggat
gacgaattcagggtttctggccatgatgttgtgccccctcctaccgctgaggatatcgtg
cagttgtatgacctcatgttgtcggagctcacctttaattcgaagcccatcattacggat
ctcacggttcttgctgacgagcagagagaacacgggaagggcattgctgacttaatttgt
gcgcgtattctcgaggttccggttgagcaaaaacttccttcattatatttattggatagc
attgttaagaatgttgggcaagaatatatcagttatttttcgtctcgtttacctgaggtg
ttttgcgaggcttataggcaagttcatcctaatttgcataatgcaatgcgccacctcttt
gggacatgggcaactgtgtttccaccatccatcattcggaagattgaagctcaactttct
cagctaacagcacaagagtcgtcaagtttgacatcctcaagggcttctgaatctcctcgg
ccaactcatggcattcatgtcaatccaaaatacttgcgtcaactggaacactctgtggtg
gataaacagatccatgatgcaagaggggtctcagctctaaaagttcatgataaaaagctt
gcttccggatacgaagagtatgattacgatcatgcagaggttcttgaacatggtggagct
caagcatttcatttgcggagcatggcccatgattcttttgctcttggaacaaataaagca
aatataaagctagcgaaatcgtccccgtcttcaagaattggacacaatagacctctacaa
tcagctggtgatgaacttgaagcagttagagcctcaccctcgcagaatgtatatgattat
gaaggttctagaatgattgatagaattgaggatactaataaatggagaagaaaacaatat
cctgacgataatctgaatggacttgaaagtacatcatataatattagaaatggacatgca
cttgaggggccaagagctttaattgaagcatatggaagtgataaaggaaagggttattta
aatgacaatccacctcaggctgaacatttttctatcaatggtatagacaacaaggtgact
ccagtaacatggcagaacactgaagaagaagagtttgattgggaagatatgagccccaca
ttagctgatagaggcagaaacaatgatatgttgaagccatctgtcccaccttcaagattt
gtgacaagaacaggatttgaaagatcaaatgctatgtctatagagcctggaatgagaagc
aattggtcaagtcaggttcagctacctactattgactcctccatggttattgaagatgtg
gtccaatcaacacctgatatttggaatatgcacaatcacatttctcagacatcccagaac
ctcatgaacaataaaggagcaggaagaaatttccagacgcctttgttggggagaggcata
gctttgtctggtggggagaagatgtctccttttgctgacaagcttttgaccaatgatgct
ttacataggcccactaccattgcttcgagattgggttcttctggtcttgactctagcatg
gagttgcaatcaattgtacaatctatgggcccaaggcatcctctgaatcttcctaactct
tgcccaccctctagacctccaatttttcctgtaccaagacacaataagagtccatttgag
tctttaaatggtggtaattctttcatcaatcgtgcaaataggtcttttttgcctgagcag
cagatgaataacatgagaaataaggagctaagtcttacaactaagttgccacaagttggc
aatcaacatactgggcatattcctttaactcggggaaaccaattgcaggccatcccttta
aaaccgcaatttctaccatctcaggacatgcaggataatttgagtgcatcagttgtacct
ccagcattaccacatttaatggcaccatccttgagtcaaggatacatttcacaaggacat
cgccctgctattagcgagtgtttgtcaagttctgcacctattgggcaatggaatttgcct
gttcataatagccccagtaaccctttgcatttacaaggggggccactgccacctcttcca
cctgggcctcatcctacttccattccgacgatacctatacctcagaaggcaggatccctt
gttcctggtcagcgaccaggaactgaattttctggcctgataagttctctcatggcccag
ggtttaatctcattgaacaatcaaccttctgtacaggattctgttgggttagaattcaat
ccagatgtactcaaggtgcgacatgaatctgcaataactgctctatatgctgatcttcct
agacaatgcatgacctgtggtcttcggttcaagacccaggaagagcatagtaatcatatg
gattggcatgtcactaaaaatcgaatgtcaaaaagtaggaagcaaaagccttctcgcaaa
tggtttgtaagtattagcatgtggcttagcggtgcagaggctctgggaacagaggcggtt
ccaggatttttgcctcctgaggtcattgtagagaaaaaagatgatgaagaactggccgtt
cctgctgatgatgatcaaaaaacgtgtgcattatgtggggaaccttttgaggatttttac
agtgatgaaacagaggagtggatgtatcggggtgctgtctacatgaatgcacctgatgga
caaacagccggcatggatagatctcagttagggcccatagtgcatgctaaatgcaggaca
gaaactaatgtggtaacctccgaaagttttgaacaagaagaacaaggggtatgcttatat
cttttttgtttttttcccttagccccatgttacctgcgcgttccttttgccctctcatgt
ggttgcttgttaatgtataccaggtgctttcttatctgcaagatcttgtgttcttcgaaa
ctcacgttgttaattttttgctgcagggagttagtgaagagggtaatcgaagaaaacgat
tgcggagctagcctaaatggatttctatactctcgctgtagcttatacaagttttttcca
catgatcgcttgttctcacagtag
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integrated database retrieval system
