Benincasa hispida (wax gourd): 120082867
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Entry
120082867 CDS
T07258
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120082867
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120082867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
Motif
Other DBs
NCBI-GeneID:
120082867
NCBI-ProteinID:
XP_038894149
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All DBs
Position
8:40509132..40524048
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AA seq
1165 aa
AA seq
DB search
MEAPTEEKDSPHEEQNPKTSLFPLSFVANNPQSQSSPPTSSVPQWLCNSSFTTDLSVIND
ALSSQNNAYPSFPDDGDQEEAVADEGGPSDRREVQKPSRSYELLESSASDDDSEHEKRKK
RKKRRRRRRNESEDRGGFGEYGSRKSDVRAWADADGRPSKDYYFDSNGDRDNLVFGSLYR
MDVARYRPLNRGETPGLNFHGFSQWNKSSSALDRDADADVLDSKVKSGGRYWSAKNAAIE
RHKNFKRVRIGFSRKTPDTLLDDFIPLSGVQTSNNIEESWEDEVLRKTREFNKLTREQPH
DEKAWLAFAEFQDKVAAMQPQKGARLQTLEKKISILEKASELNPENEELLLYLLKTYQNR
DNIDVVISRWEKILMQNSGSYKLWREFLHLIQGEFSRFKVTDMRQMYAHAIQALSAACNQ
HIRQTDQTAKPSVEHDLIKLELGLVDIFMSLCRFEWQAGYQELATALFQAEIEFSLFCPA
LHLNDRSKQRLFEHFWNTDAERVGEEGALGWSTWLEKEEENRQKAMREEALEADEKGGWT
GWSDPAPKEKKNSDATETTIEMGVAAEETMEEYVEEEDIDREDSTEALLKILGINADAGV
DEEVKDASTWARWSKEESLRDCEQWMPIRGKTADVIHDERMGDGETSEQLLRVILYEDVK
EYLFSLISSEARLSLIYQLIEFFSGKIYSRASSNSSSWMERIISLEVLPDDILHHLRSVL
HVLNKRQSSSSSSTLEVLVGGSDNLSQMSDMMKFLRNAILLCLTAFPRNYILEEAALIAE
ELFVTKMNSCSSSVTPCRSLAKNLLKSDRQDMLLCGVYARREATYGNIDHARKVFDMALA
SVESLPVQDQKSNAPLLYFWYAELELANDHHNGHNSLNRAVHILSCLGSGTAYSPFKCQP
SSLQLLRAHQGFKEKIREVRSTWLHGVIDDSSVALISSAALFEELTTGYLAGLEVLDQAF
SMVLPERRKQSYQLEYLFNYYVKMLLRHHKQLSHLKVRESISHGLQFYPLNPELYSAFLE
ISYIYSVPSKLRWTFDDYCQKQPSLILWIFALSFEMGYGGSLHRIRRLFEKALENENLRH
SVLLWRCYISYELNTACDPSSARRVFFRAIHSCPWSKKLWLDGFLKLNTVLSAKELSDLQ
EVMRDKELNLRTDIYEILLQDELVS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggaagctccaacagaagagaaggattcaccacacgaagagcaaaaccccaaaacctcc
ctcttcccgctctccttcgtcgccaacaatcctcagagtcaaagcagtcctcccacttca
agcgttcctcagtggctatgcaactccagcttcaccactgacctatccgtcatcaacgac
gctctttcatctcaaaataatgcctatccttcctttcccgacgacggcgaccaggaagag
gctgtggcagatgaaggaggtccaagtgatagacgtgaggtgcagaagccttctcgatca
tatgaattgctggagtcttctgcttcggacgacgattccgagcatgagaagaggaagaag
aggaagaagaggaggaggaggaggcgaaatgaatctgaagatagagggggatttggcgaa
tatggttcgagaaagtctgacgttcgggcgtgggccgatgctgatgggagaccttccaag
gattattacttcgactcgaatggagaccgggataatttagtattcgggtctctttacagg
atggatgttgcacgctacagaccgctcaaccgtggggaaacacctggactaaattttcat
ggattttctcagtggaataaaagtagttcagccttggacagagatgctgatgctgatgtg
ttggatagtaaagtgaaatcaggtggacgctattggtctgcaaagaatgcagcaatagag
cgacataaaaacttcaaacgtgtacgcattggtttttctaggaaaactccagacacatta
ttggatgatttcattcctttgtcgggtgttcaaacatcaaataatattgaggaatcttgg
gaggatgaagtgctacgtaaaacgcgggagtttaataaattgactagggagcaaccccat
gatgagaaggcttggttagcttttgctgaatttcaagacaaagttgcagctatgcaacct
cagaaaggtgctcgcttacaaactctagagaaaaagattagcatattggagaaggcttct
gagcttaacccagaaaatgaggaattattgctgtaccttttaaaaacttatcagaacaga
gataatattgatgtggtgatcagtagatgggaaaagatactgatgcagaattctggaagt
tataagttgtggagagagtttttgcatctcattcaaggggagttctctagattcaaggtt
acagacatgaggcaaatgtatgcacatgcaattcaagctctatctgctgcatgcaaccag
cacattaggcagaccgatcaaactgccaaaccctcagtggagcatgatcttattaagcta
gaacttggtctggttgatattttcatgagtttgtgccggtttgagtggcaggcgggatat
caggagttggctactgctttatttcaggctgaaattgaatttagcttgttttgccctgct
ttgcatttaaatgatcgaagtaaacaaagattgtttgaacacttttggaatactgatgcg
gaaagagttggtgaagaaggtgccctcggttggtctacatggttagaaaaagaggaggaa
aataggcaaaaggctatgagagaggaagccttagaggctgatgaaaagggtggttggact
ggttggtctgatccagcacccaaagagaagaaaaatagtgatgccacggaaacaactata
gaaatgggtgtggcagcagaggagactatggaggaatatgtggaagaagaagatattgac
agagaagatagcacagaagctttgctcaaaattctaggaattaacgctgatgcaggtgtc
gatgaagaggttaaggacgcctcaacctgggctagatggtcaaaagaagagtcattaaga
gactgtgaacaatggatgcctatccggggaaaaactgcagatgttattcatgatgaaagg
atgggtgatggagaaacaagtgaacaacttttaagagttatattatatgaagatgtcaaa
gagtacctgttttcattgatttcaagtgaggcccgtttatccttaatatatcagctgatt
gaattctttagtggaaaaatctattcaagggcgtcttcaaatagttcaagttggatggag
agaataattagtttagaggtgttgccagacgatattttacatcatctgagaagtgttctc
catgttcttaataaaagacaaagtagttcaagtagctccactttggaggtccttgtggga
ggttctgataacttatctcagatgtctgacatgatgaagtttcttcgcaatgctatctta
ctttgtttaacggctttcccacgtaattacatactggaagaagctgctttaattgccgaa
gagttatttgttacaaaaatgaattcttgtagctcctcagttaccccttgccgttccttg
gcaaagaatctcttgaaaagtgatcgtcaggacatgctactttgtggagtctatgcaaga
agagaggcaacatatggaaatatcgatcatgctagaaaagtatttgatatggcattggca
tctgtggaaagccttcctgtgcaggatcagaagtctaatgctcctctcttatatttctgg
tatgctgaattggagcttgcgaatgatcatcacaatggacacaattcattaaatcgtgca
gttcacattttatcttgccttggaagtggtactgcatacagtccatttaaatgtcaacca
tcaagcttgcaactgctgagagcgcaccaaggctttaaagaaaaaatcagggaagtgcga
tctacatggctccatggagttatagatgactcgtctgtagctctcatatcctctgcagct
ttgtttgaggagttgaccactggataccttgccggccttgaggttttagatcaggctttc
tccatggtacttccagaaagaagaaaacagagctatcaactagaatatttgttcaactac
tatgtgaagatgcttctgagacatcataagcaattaagccatctgaaagtccgggagtca
atttctcacggattgcagttctatccattaaatccggaactttatagtgcttttctggag
attagttacatttattcggtacccagcaaactgcgatggacctttgatgactactgccag
aagcaaccttctctgattctttggatttttgcattatccttcgagatgggttatgggggt
tctcttcatcgaatccgtagactgtttgagaaggcactggaaaatgaaaacttacgtcat
tctgttcttctctggcgctgctacatttcatatgagctgaacacagcatgtgatccttct
tcggcccggcgagttttcttccgagctattcattcctgcccatggtcaaaaaagttgtgg
cttgatggttttctcaaactcaacactgttttgagtgcgaaagagctttcggatcttcaa
gaagttatgcgcgataaagagctcaatctgcggaccgatatctatgagattcttttgcaa
gatgaactcgtgtcttga
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