Benincasa hispida (wax gourd): 120082881
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Entry
120082881 CDS
T07258
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03022
Basal transcription factors
bhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120082881
09124 Replication and repair
03420 Nucleotide excision repair
120082881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120082881
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120082881
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120082881
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120082881
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
120082881
NCBI-ProteinID:
XP_038894178
LinkDB
All DBs
Position
8:14411045..14446662
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AA seq
595 aa
AA seq
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MGTKYVHKSAKYKTSIKDPGTPGVLEMTEWKFIFRPSDPTSASKLDVEFRFIKGHKNTKE
GSNKPPWLNLTRDQGGSIIFEFKNFSDLHVCREFVGSALAKSGEAAQAPPERPVAAFPHE
QLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLIGF
KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQIFALKPAVHQAFLNHVPNKMSEKDFWTKYF
RAEYLHSTKNSIAAAAEAAEDEELALFLKDDEILAAEIRKKIRHVDPTLDLEADLGDDYT
HLPDHGIFRDGGKEITESQNEHYRRTLSQDLNRQGAVVLEGRTIDVDLEDPRTVAEALVQ
SRHAVEGNEKQTALDRISRMTAIEDLQEPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT
RAGMQQTKCSLSTTEAYCSLRESISEIKSSGLNHPIIKPEVALMVYNGLTQNISSTKYQL
GKNPQESILESLPNPTKEELLHHWISIQELLRHFWSSYPITTSYLYTKVSRLKDAMSKIY
RQLEEIKETVMADFRHQVSLLVRPMHQALDAAFQHHDADLQKRSVKSGERPNGYT
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccaagtatgtccataagagtgctaagtacaagacctcaattaaggatcctggc
acgcccggcgttttggaaatgacagagtggaaattcatatttagacccagcgatcccact
tcagcttctaagcttgatgtggagtttagatttattaaaggccacaaaaacactaaggaa
ggatcaaataaaccaccgtggcttaatctcaccagggaccagggtggaagtatcattttt
gagtttaaaaatttctcagatcttcatgtttgccgtgagtttgtaggaagtgctttagca
aagtcgggagaggctgcacaagctccacctgagaggcctgtggcggcatttcctcatgaa
cagctcagtaaatcagaaatggaactccgaatgagatgtttgcaagaggatagtgaactg
cagaaactccataaacaatttgtgattggtggtgtgttgactgaatctgagttttgggca
gcaaggaagaaattactggaacgggacaactccaaaaagtcaaaacaactgattggtttt
aagagttcaatggttttggataccaaaccaatgtctgatggtcggacaaacaaggttaca
tttaatttgacaccggagataaaatatcagatttttgccctgaaaccagctgttcaccag
gcattccttaatcatgttcccaataagatgtcggagaaagacttctggacaaaatatttt
agagcagagtaccttcatagtacaaaaaattctattgcagctgcagcagaggctgctgaa
gatgaagaacttgccctttttctgaaggacgatgagatattggctgctgaaattcggaaa
aagattcggcatgttgatcctacactggatttggaagctgatctaggagatgattacaca
caccttccagatcatggaatctttcgtgatggtggcaaggaaataactgaatcacaaaat
gagcactatcgaaggactttgtcacaagaccttaatcgtcaaggtgcagttgttcttgag
ggcagaactatagacgtggatttggaagatcctaggacagtagcggaagcactcgtgcag
tctagacatgcggtagaaggaaatgagaagcagacagcacttgataggatctctaggatg
acagcgattgaggatcttcaagaacctcatagccatccttttgctcctctttgtatcaag
gatcctcgagattattttgatgctcaacaagcaaatgccattaagacgttggatgataca
cgagctggaatgcaacaaactaaatgcagtttgagcactacagaagcatattgctcactg
agggaatccatatctgagatcaaatcttctggactgaatcatcccataattaaacctgaa
gttgcacttatggtttacaatggattaactcaaaatatttctagtaccaaatatcaacta
gggaaaaaccctcaggagagtattctggagagtttaccgaaccctactaaggaggaactt
ctacatcattggatctcgattcaagaattactcaggcatttttggtcgtcttatccaatc
accacatcatatctttatactaaagtgagcaggttgaaggatgccatgtcaaaaatctat
cgacagttggaggagattaaggaaactgtgatggcggatttccgccaccaagtatctctt
ttggttcgtccaatgcatcaggctctggatgctgcatttcagcatcatgacgctgactta
caaaagagatcagtaaagagtggagaaaggcctaacggatacacttga
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