Benincasa hispida (wax gourd): 120083007
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Entry
120083007 CDS
T07258
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120083007
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120083007
Spliceosome [BR:
bhj03041
]
Complex C
Other components
Complex C specific factors
120083007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
nSTAND3
SRP54
T2SSE
AAA_11
AAA_29
AAA_23
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120083007
NCBI-ProteinID:
XP_038894406
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All DBs
Position
8:complement(64210857..64235921)
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AA seq
695 aa
AA seq
DB search
MAQFWKPGTEKPQLLDDGEGGVLFFSSSYSSSSGFGFSSTEKQRQRLPVYKYRTAILYLV
ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
LGEEVGYTIRFEDLTNLDVTRVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDM
LLGLLKKIQRRRPDLRLIISSATIEAKSMSTFFQTSKRRRGLEGEGLEPKVDPAILSVEG
RGFNVQIFYLEEPVSDYVQSAVSTVLSIHEQEPPGDILVFLTGQDDIDAAVQLLREEERN
DRKKSELIVLPLYSGLSRAEQELIFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS
KQRFYNPISDIESLIVAPISKASARQRTGRAGRIRPGKCYRLYTEEYFMNEMPAEGIPEM
QRSNLVTCVIQLKALGIDNILGFDWPSPPSPEVMVRALEVLYSLGVLDDDAKLTSPVGFQ
VAEIPLEPMISKMILASGELGCSEEIITIAAVLSIQSIWASSRGGQKELDEARLRFAAAE
GDHVTFLNVYKGFLQSNKSSQWCHKNFINYQAMKKVMEVREQLRRVAQRLGIVLKASERD
TTAVRKAVTAGFFANACQLEAYSHNGMYKTVRGSQEVYIHPSSVLFRVNPKWVVYHSLVS
TNRQYMRNVITIDPGWLTEAAPHFYQQRQLSHMPY
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctggaaaccgggcaccgagaagccccaactgctcgacgatggagaaggt
ggcgtccttttcttttcttcttcgtactcttcttcatctgggtttgggttctcgagcact
gagaagcagaggcagaggcttcctgtttataagtatcgcaccgccattttgtatttagtg
gaaactcatgccaccactatcattgttggtgagacgggtagcggcaaaaccactcaaatt
cctcagtacctcaaagaagcaggttgggctgatggtggtcgagtaattgcctgtacccaa
cctagacgactggctgttcaggcagttgcttctagggtagctgaagagatgggcgttaag
ctcggagaagaagttggttatacaatcagatttgaagatcttacaaacctagatgtgacg
agggtaaaatttctcacagatggtgtgttactcagagagatgatggacgatcctcttttg
accaagtatagtgtaataatggtggatgaagcacatgaaaggtctatctcaactgacatg
ttacttggcctcttgaaaaagattcaacggcgacgaccagatctacgattgattatctct
tctgctacaattgaagctaaatcaatgtcaactttcttccaaaccagcaaaaggcgtaga
ggactcgaaggtgagggacttgaaccaaaggtggatcctgcaatcctatcagttgaggga
agagggtttaatgtacaaatcttttacctcgaggagcctgtttcggattatgtccagtct
gctgtttcaactgtattatcaattcatgaacaggaacctccaggtgacatacttgtattt
ctcactggccaagatgatattgatgctgctgttcaattacttagagaggaagagcgaaat
gacagaaaaaaatcagaattgatcgtcttgcctctgtactctgggctttcacgtgcagag
caggagcttattttctcaccgacccccagggggaagaggaaagtagtgatttcaacaaat
atagcagagacatcgttaactctagagggaattgtctatgttgttgacagtgggttttcc
aagcagcggttctacaatcctatatcagatattgaaagccttattgttgcacctatatct
aaggcctcagctagacaaaggactggtagggctggaagaattcgacctgggaagtgttac
aggctgtatacagaagaatatttcatgaatgaaatgcccgcggagggtattcctgagatg
caaagatcaaatcttgttacctgtgtcattcagttgaaagccttgggaattgataatatt
ctaggcttcgattggccatcacctccatctcctgaagtaatggttcgggcattagaagtt
ctttattcacttggagtcttggatgatgatgcaaagcttacttcaccagttgggtttcaa
gttgcagagattccacttgagccaatgatctcaaaaatgatcttagcttctggtgaactt
gggtgctcagaggagataattacaatagccgctgtactgtcaatccagtccatttgggct
tctagtaggggagggcaaaaggagcttgatgaagcaaggttgcgatttgctgcagctgag
ggcgaccatgtgacctttcttaatgtgtataagggatttcttcaatctaataaatcttcg
cagtggtgtcacaagaactttatcaattaccaggctatgaaaaaagttatggaagttaga
gaacaactcagaagagtagcacagagattaggaatcgtcttgaaagcaagtgaaagagat
acgactgccgtacgcaaggcggtaactgctggattttttgccaatgcttgtcagttagag
gcatacagtcacaatggaatgtacaagactgtcagaggttctcaagaagtttatattcat
ccctcttcagtgttattcagagttaatccaaagtgggtcgtatatcattcgctcgtgtca
actaacagacaatacatgcgtaatgtcatcaccattgatccaggatggttaaccgaggcc
gctccccatttttaccagcagaggcagctcagtcatatgccttactga
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