Benincasa hispida (wax gourd): 120083026
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Entry
120083026 CDS
T07258
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120083026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120083026
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120083026
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120083026
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120083026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
120083026
NCBI-ProteinID:
XP_038894441
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All DBs
Position
8:complement(33725143..33737972)
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AA seq
708 aa
AA seq
DB search
MEDSDGVLSFDFEGGLDAAPTNPAAAAAASSLPLIHSDSSAPPALSNSVPGPLGPAPTPE
APGAPTGNAGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHIGSYNHGPS
NKLFLQRGVGLSQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQPQVQQSTQQTSQTQI
QSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS
FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAEAKREEE
KAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPH
MPMGRGARPFHGMQGFPPGMIGPDGLSYGPVTPEGFPMPDIFGMAPRGFGPYGPRFSGDF
MGPPSAMMFRGRPSQPGAMFSPSGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVGVSPLY
PPPAVPSPQNINRAVKRDQRGPTSDRNDRYIVGLDQNKGQEMPGSGYDDGMQYKQGSKGY
SDEQYGMGTTFRNEESESEDEAPRRSRHGEGKEKRRGSEGDATAISDQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaggactccgatggcgttctcagcttcgatttcgagggtggcctcgatgccgccccc
acgaaccccgccgccgccgccgccgcctcctccttgcccctcatccactccgactcttct
gccccgcccgccctctccaattccgttcctggccccctcggtcctgctcctacacctgaa
gctcctggtgccccaactggcaacgccggcagccggaggagcttccggcaaacggtttgc
cgccattggctccgcagtctctgtatgaagggtgatgcttgtggcttccttcaccagtat
gataagtctcggatgcccatttgccggttctttcgtctttatggcgagtgccgcgagcag
gattgcgtgtacaaacataccaatgaagatatcaaggagtgtaatatgtacaagtttggt
ttctgtccaaatggtcctgattgtcggtataggcatgcaaagttgcctggacctccacct
tcagtcgaagaaatccttcagaaaatacagcacataggctcatacaatcatggtccctca
aacaaattatttttacaacgtggagttggcttatcccaacagaatgaaaaatctcagttt
cctcagggtccggcccctgttactcaaggagtgataggaaaaccttctacagcagaatct
gctaatgtccaacaaccgcaagttcagcaatctacacaacaaaccagccagactcagata
caaagtctttctaatggccagcccaatcagttaaacagaaccgcaacgtctttgcctcaa
ggaatatctaggtactttattgttaaaagttgcaaccgcgagaatttggagttatctgta
caacaaggggtatgggcaactcaaagaagcaatgaagctaaacttaatgaagcttttgat
tctgctgataatgttattttgattttctcagtcaatcggactcggcattttcagggttgt
gcaaagatgatgtccaggattggtggatctgtcagtgggggcaattggaaatatgcacat
ggaactgcacattatgggcaaaacttttcgctcaaatggcttaagttatgtgaactatcc
ttccagaaaacgcgccatttgaggaatccgtataatgaaaacttaccagtaaagatcagt
agagattgccaagagttagagccctctattggtgagcagctggcttctttactttatctt
gagccagatggtgaactgatggctgtctcaatagcagcagaagcgaaacgagaagaggag
aaagcaaagggagttaatcctgatattggaaatgagaacccggatattgtcccgtttgag
gataatgaagaagaggaagaggaagaaagtgaagaggaggaggaggagagctttggtcaa
tccgttggtctaccagctcagggcagagggaggggcaggggaatcatgtggcccccacat
atgccaatggggcgcggtgccagacccttccatggaatgcagggttttccacctgggatg
attggtccggatgggttgtcttacggtcctgttacacctgaaggatttcccatgcctgac
atttttggtatggcccctcgtggttttggtccctatggtcctaggttttccggtgatttt
atgggtcccccatctgctatgatgtttcgtgggcgaccttctcaacctggggccatgttc
tccccttctgggtttgggatgatgatgggtcaaggacgtggtccctttatgggtgggatg
ggagttaccggtacgaacccagctcgacctggtcgtcctgtgggtgtgtctccattgtat
ccacctcctgcagtaccctcacctcagaacatcaatcgagctgttaagagggatcaaagg
ggaccgactagtgaccggaatgacagatacattgtgggtctggaccaaaacaagggccag
gagatgccgggtagtgggtatgatgatggaatgcaatataagcagggatcaaaaggctat
tctgatgagcaatatggaatgggaaccacctttagaaatgaagaaagcgaaagtgaggac
gaggcacctcggcgatcaaggcatggagaggggaaggagaagcggagaggctcagaagga
gatgcgactgcaatctctgatcagtga
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