KEGG   Benincasa hispida (wax gourd): 120083535
Entry
120083535         CDS       T07258                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
bhj  Benincasa hispida (wax gourd)
Pathway
bhj03020  RNA polymerase
bhj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bhj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120083535
  09124 Replication and repair
   03420 Nucleotide excision repair
    120083535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bhj03021]
    120083535
   03400 DNA repair and recombination proteins [BR:bhj03400]
    120083535
Transcription machinery [BR:bhj03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     120083535
  RNA polymerase III system
   RNA polymerase III
     120083535
  RNA polymerase I system
   RNA polymerase I
     120083535
DNA repair and recombination proteins [BR:bhj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120083535
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 Mrr_cat
Other DBs
NCBI-GeneID: 120083535
NCBI-ProteinID: XP_038895255
LinkDB
Position
8:28456093..28461489
AA seq 206 aa
MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDSELAMSREQFKYKFGESMKREDLVINKSK
RNNSSEQIYIFFPEEPKVGIKTVQTYVNRMKSENVSRALLVVQQNLTPFARTKVGEISSQ
FHLEVFQEAELMVNIKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG
MKRGQVVKIIRPSETAGRYVTYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggtgttgtcagaggaagagatcaccaaattatttagagtccgaaaaactgtgttgcag
atgttgaaagatagaggctactttgttggagactctgagcttgctatgtcaagagaacaa
tttaagtataagtttggtgagagcatgaaaagagaagatcttgttatcaataaatccaag
agaaataatagctctgagcagatatatattttctttcctgaagagccaaaggttggtatt
aagacggtgcaaacttatgtcaatcgtatgaaatcagagaatgtctctagagcattattg
gttgtccaacagaatttgaccccctttgctcgtactaaggttggcgaaatatcttctcaa
ttccatttggaggttttccaggaagcagaattgatggtcaacattaaagatcacgttctc
attcccgagcaccagttgctgacaaatgaagagaagaagacgttgttggagaggtatacg
gtgaaagaaacacaactacctcgcatacaagttaccgatccaattgctagatattatggg
atgaagcgtggacaagtagtgaaaatcattcgaccaagtgaaactgcaggaagatatgtg
acttatagatatgttgtttga

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