Benincasa hispida (wax gourd): 120084213
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Entry
120084213 CDS
T07258
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120084213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120084213
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120084213
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120084213
mRNA degradation factors
3'-5' decay
Ski complex
120084213
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
HCMV_UL15A
Motif
Other DBs
NCBI-GeneID:
120084213
NCBI-ProteinID:
XP_038896037
LinkDB
All DBs
Position
8:complement(17511574..17561760)
Genome browser
AA seq
1355 aa
AA seq
DB search
MDPIVATKELSFRVGFSGHSGHLRVEPLSTVERSNPIRSLPDFILPPAFPKETPETIKNY
IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKISLDPSQPRSVMVPTWVLPFERPKKDG
TAGGTWEPDSLQVDVSELNVETQDSGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID
RILPDAASNGEWVHEVLNGGPAQFVPPILKQGLDLGDLKEYPNSWNVYEDQRSSSFKTSP
VENLQSELSVQFDDLFKKAWEEDAIVSVEDGVCSGQSPKAESIKSEAQVNELEAISIAPA
PGISALDEILSLESGGLSLRPDQATDGGGQKREAWVVVGDREEISLRFHELVPDMALDFP
FELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ
KYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN
DIERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKRIHVTGTSKRPVPLEH
CIFYSGELYKICESEIFLSHGLKAAKDASKKKSLSVVGGTGGSHVGASVANDGARNRKIE
SFNRSKQNKHSGSQNLGNFSGTSWGNQKNGDGQNNWGSRRSDASLWLLLINRLSKKSLLP
VVIFCFSKNRCDKSADSIYSIDLTSSSEKSEIRVFCDKAFSRLKGSDRSLPQIVRVQGLL
RRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKE
FRQLLPGEYTQMAGRAGRRGLDKIGTVIVMCRDEIPEEKDLKHVIVGTATKLESQFRLTY
IMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQPTRTVECIKGEPTIEE
YYELYAEAEKPSNQISEAVMQSSAIQQFLTPGRVVIIKSQSAKDHLLGVIVKALSIVSRQ
YIVLVLKPDSPPVQSSSSGDLEKKMEDLSQGYFMVPKSKRGLENDYYSPSTRKGSGVVNI
RLPHAGAAVGVSYEVRGVDAKEFLCVCSKKIKLDPGRLLEEVSNVAYSQTVQQLLDIKSD
GKYPPALDPLKDLKLKDVNLVEAYKDLTDISLKMVVNKCHGCIKLGEHLKLAAEIKKHKE
EVNNLKFQMSDEALQQMPDFQGRIDVLKEIGCINADLVVQIKGRVACEMNSGEELICTEC
LFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRL
QVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNA
AAIMGNSALHKKMETASNAIKRDIVFAASLYITGL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggacccaattgtagcaacaaaggagctatcatttcgtgtcggtttttccggtcacagc
ggtcatctcagggtcgagcctctttcaactgtcgagcgctccaacccgattcgatcgctc
ccggatttcatacttccacctgcatttcctaaggaaactcctgaaacgataaagaactac
atagaagagacttatctccagccaaggttagaccccgatgaattctcccctgaaaaagtg
ggaagacagtgggattttgattggtttgaaatggcaaaaatatccttggatccatctcag
ccaagatctgtcatggttcctacatgggtgttgccatttgaacgccccaagaaggatgga
actgcaggagggacgtgggaacctgattctctgcaggtggatgtttccgagttaaacgtg
gagactcaggattctggttcacagccacgagtgcctggaccagcaaaagattttgtaagg
ggaagcataaataatcgtccttttcgacctgggggtttggacgattcccaatctattgat
agaattcttcctgatgcagcttctaatggtgagtgggttcatgaagttctaaatggtggc
cctgctcaatttgttccacctattttaaagcaaggattggaccttggtgatctcaaggaa
tatcctaactcgtggaatgtttatgaggaccaacgttcatcttcattcaagacctcacca
gttgaaaacctgcagagtgaattgtctgtacaatttgatgatttgttcaagaaggcctgg
gaagaggatgccatagtatctgtggaagatggtgtgtgttctggtcaatcaccgaaagca
gaatctatcaagtcagaagctcaagtaaatgagctcgaagccattagcattgcacctgca
cctggaatatctgcgttggatgaaattttgtcccttgaatctggaggattgtcattaaga
cccgatcaagctactgatggtggaggacaaaagagggaggcttgggttgtagttggtgac
cgtgaagagatctctttgcgctttcatgagcttgtacctgatatggcccttgattttcct
ttcgaattagacacttttcagaaggaggctatatatcatcttgaaaagggtgattctgta
tttgttgctgcacatacttcggctggaaagactgttgttgcagagtatgcatttgctcta
gccaccaaacactgtaccagggccgtatatacagctcccatcaaaaccatcagtaatcag
aagtatcgagatttttgtgggaaatttgatgttggacttctgactggcgacgttagcctg
aggccagaggcttcttgccttataatgaccaccgaaatattaaggtcaatgctttatcga
ggtgctgatattattcgtgatattgaatgggttatatttgacgaggtgcattatgtcaat
gatattgaaagaggtgttgtttgggaagaagttatcattatgcttccaagacatatcaat
attgtccttctttcagccacggttccaaacacaatcgaatttgctgactggattggtagg
acgaagcaaaaaagaattcatgtcactgggacttccaaaagaccagtacctctggagcat
tgcatattttattctggtgaattgtataaaatatgtgaaagtgaaatttttttatctcat
ggattaaaagctgccaaagatgcatccaagaaaaaaagtttgagtgttgttggcggcact
ggtggatctcatgttggggcttcagttgcaaatgacggagcaaggaatcgaaaaattgaa
agttttaatcgaagtaaacagaataagcattcgggttcccagaatttagggaacttttca
ggaacaagttggggaaatcaaaagaatggagatggccaaaacaattggggatcaaggaga
tcagatgcttctttgtggttgttacttattaataggctctctaagaaatctctattaccc
gtggttatattttgcttctcaaaaaatcgttgtgataaatcagctgacagtatttatagt
attgacctcactagtagttctgagaaaagtgaaattcgcgtcttctgtgacaaagcattt
tctcgtttaaagggatctgatagaagcttacctcagattgttagggttcaaggacttctt
cgtagagggattggagtgcatcatgcaggtctccttccaattgttaaagaagttgttgaa
atgctattttgtcgtggtgtgataaaggtcttgttttcaacagagacgtttgcgatggga
gttaatgcaccagcaagaacggttgtttttgacaccttaaggaagtttgatgggaaggag
ttcaggcaattattaccaggggaatatacccaaatggcgggtcgtgctggtagaagggga
ctggataaaattggtactgtcattgtaatgtgtcgagacgagattccagaagagaaggat
ttgaagcatgtgatagttggaactgctaccaagcttgaatctcaattccgtttgacctat
attatgatcctacatcttcttcgggtggaagagctaaaggtggaagacatgttgaaaaga
agttttgctgaattccacgcacagaagaaactccctgaaaagcagcaacttttaatgcga
aagctagctcaacctacaagaacagtagaatgtattaaaggtgagccaaccattgaagaa
tactacgagttatatgctgaagctgagaagcctagcaaccagatctcagaagcagtcatg
caatcgtctgcaattcaacaatttcttactcctggaagagtggtcattataaaatcacag
tctgccaaagatcacttacttggagtcattgtcaaagccctttctatagttagcaggcaa
tacattgttctggtgctgaaacctgattcaccacctgtccaaagttcctcaagtggtgat
ttagaaaagaaaatggaggatttgtcccaaggctactttatggtaccaaaatcaaaacgc
ggtcttgaaaatgattattattctccatcaacacgtaaaggatctggtgttgtgaatata
agattaccacatgctggtgcagcagtgggcgtaagttatgaggttagaggagtcgatgcc
aaagaatttttgtgtgtatgcagtaaaaagataaaattagatccaggcaggcttcttgaa
gaagtaagcaatgttgcttactcccagacagttcaacagcttttggatataaaatctgat
gggaagtaccctccggccttagatccattaaaagacttgaagttaaaagatgtgaatctt
gtggaggcgtacaaggatttgactgacatatcgctaaagatggtagttaacaagtgccat
gggtgtataaaattgggggagcacctgaaattagcagcagagataaagaaacacaaagag
gaagtcaataacttgaagtttcaaatgtcagatgaagcacttcaacaaatgccagacttt
cagggccggattgacgttttgaaggaaattggctgtataaacgctgacctggttgttcaa
atcaaaggtcgggttgcctgtgagatgaactctggggaggagttgatctgtacagaatgt
ttatttgagaatcaattggacgaccttgaaccagaagaagcagtggcattaatgtctgct
tttgtgttccagcaaaaaaatacgtccgaaccttcccttaccccaaagctgtctatggct
aaaaaaagattgtatgagacagcaataagacttggccagcttcaagcgcagttcagactt
caagttgaccccgaggaatatgctcgagacaacctcaagttcggtctcgtcgaagtagtc
tacgaatgggctaaaggaactccatttgcagatatttgtgagcttacagatgttcctgaa
ggcatgatagtgagaactatagtcagactggacgaaacgtgccgagaattcaaaaacgca
gcggctattatgggtaattctgcactccataagaagatggaaactgcctcgaatgctata
aagcgcgatatcgtctttgctgctagtttgtacattactggactctga
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