KEGG   Benincasa hispida (wax gourd): 120085208
Entry
120085208         CDS       T07258                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
bhj  Benincasa hispida (wax gourd)
Pathway
bhj03030  DNA replication
bhj03410  Base excision repair
bhj03420  Nucleotide excision repair
bhj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bhj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120085208
   03410 Base excision repair
    120085208
   03420 Nucleotide excision repair
    120085208
   03430 Mismatch repair
    120085208
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bhj03032]
    120085208
   03036 Chromosome and associated proteins [BR:bhj03036]
    120085208
   03400 DNA repair and recombination proteins [BR:bhj03400]
    120085208
DNA replication proteins [BR:bhj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120085208
  DNA Replication Termination Factors
   ELG1-RFC complex
    120085208
Chromosome and associated proteins [BR:bhj03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120085208
DNA repair and recombination proteins [BR:bhj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120085208
  Check point factors
   HRAD17(Rad24)-RFC complex
    120085208
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 Mg_chelatase AAA_11 AAA_5 AAA_24 AAA_assoc_2 AAA_14 SLFN-g3_helicase nSTAND3 ResIII AAA_2 AAA_19 AAA_18 AAA_7 AAA_28 AAA_30 DUF3853 T2SSE TIP49 Ribosomal_L5_C NPHP3_N bpMoxR AAA_25 DUF815 RNA_helicase
Other DBs
NCBI-GeneID: 120085208
NCBI-ProteinID: XP_038897028
LinkDB
Position
9:72651921..72658517
AA seq 336 aa
MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL
AISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVSVSGII
PREVVDALFSACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKARIC
KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggcgccattgttgcagagctctcaaccatgggtggagaaatatcgaccgaagcaagtg
aaagatgtagcgcatcaggatgaagtggttcgggtgctcaccaacaccctcgagactgct
agttgtccccacatgctcttctatggaccgcctggtaccggaaaaaccacaaccgctctt
gcgatttcccatcaactatttggtcccgaactttacaagtccagagttttggagttgaat
gcaagtgatgaccgtgggatcaatgttgttcggactaagattaaagattttgctggtgtt
gcagtaagcagtggccaacgccaagggggttatccttgtccaccattcaagataatcatt
ttggatgaggctgattcaatgactgaagatgctcagaatgcgctgaggcgtaccatggaa
acacactccaaagtgacacgattcttttttatatgcaactatatcagcaggattatagag
ccccttgcatcaagatgtgcaaagtttaggtttaagccactctctgaagaggttatgagt
aaacgtatattgcacattagtaatgaagaaggtcttagtctagacggagaggctctttca
accttaagttcaatctctcaaggtgacctacgtcgagctatcacatatttacagtcagca
gcacgtttatttggatcatcaatctcttccaaggatttggttagtgtgtctgggattatc
cctcgggaggttgttgatgcactttttagtgcttgtaaaagtggtaactttgatattgca
aacaaggaagtcaacaatgtacttgcagaaggatatccagtggctcaaatgctttcacag
atatttgaggttgttgttgaagacaatgatttgcaagatgaacagaaggccaggatatgc
aagaagttggccgaagcagacaagtgtcttgttgatggtgcggatgaatatttgcaactg
ctcgacgtggttagtcaaacaatgcaagctttaagtagtatgcaactgtaa

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