Benincasa hispida (wax gourd): 120085294
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Entry
120085294 CDS
T07258
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120085294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhj03019
]
120085294
03041 Spliceosome [BR:
bhj03041
]
120085294
Messenger RNA biogenesis [BR:
bhj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120085294
Spliceosome [BR:
bhj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120085294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
Motif
Other DBs
NCBI-GeneID:
120085294
NCBI-ProteinID:
XP_038897136
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Position
9:85145184..85149912
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AA seq
815 aa
AA seq
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MDEEIEEGMLIEDETDPPPPDGDTGKMSPYEMLRESKSSVEEIVTKMLSIKKHGEPKTQL
RELVTQMFLHFVTLRQANRSILLEEDRVKAETERAKAPVDFTTLQLNNLMYEKSHYVKAI
KACKDFKSKYPDIELVSEDEFFRDAPEDIKNSTRSKDSAHNLMLQRLDYEVFQRKELCKR
RDELEQHKKSLLEVIANRKKFLSSLPSHLKSLKKASLPVQNQLGILQTKKLKQHQLAELL
PPPLYVIYSQFLAQKEAFGENIELEIVGSVKDAQAFARHQANKETGASTNTESNKLEDDA
LDEDDDGQRRRKRPKKIPAKVDIEHAGIYQVHPLKIILHIYGNETCEPKSMKLLSLKFEW
LLKLNVICVGIEGSHEGPENNILCNLFPDDTGLELPHQSAKLVVGETIAFSDKRTSRPYK
WAQHLAGIDFLPELPPLVSAQESAGGETVRNDIVSGLSMYRQQNRIQTVVQRLRSRKKAQ
LALVEQLDSLEKLKWPVLTCDDVPWVLHKPLCCLQDWSLVGYSTRQASSLTTMEKEKVQD
PVDVDMVGKSGISREEIDGAREDGELPALVSSTSILNNAQVTPLKTSNLEHSKQLTLISK
SITPQTNYSRVLSFNKHDEDYELMLDVDSDQDEPVQTELAADDLASVPSNDITTKTWMDY
GSKEYCLVITRNTEPPAKNLKLQAKIKISMEYPLRPPVFTLNLYTMNSEENSPDSDWYNE
LRAMEAEVNLHILKMLPLDQENYILSHQICCLAMLFNYCIGEESLFSERRKSSSVIDVGL
CKPVSGSLHARSFRGRDRRKMISWKDIECTPGYPC
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagatagaggagggaatgctcatagaagacgagaccgatcccccgccacca
gacggcgatacgggcaaaatgtctccctacgaaatgctccgagagagcaaaagttctgtg
gaggagatcgtcaccaagatgctctccatcaagaagcatggcgagcctaaaactcagctc
agagaactcgttacacagatgttccttcacttcgtaacccttcgccaggccaaccgatct
attttgctggaagaggaccgagtgaaagctgaaacagagcgagcaaaagctccagttgac
ttcacgactttgcaacttaacaacttgatgtatgaaaagagtcactatgttaaagctata
aaggcctgcaaagacttcaaatcaaagtatcctgatattgaacttgtgtctgaggatgag
tttttccgggatgcacccgaagacattaagaactccacgaggtcaaaggacagcgcgcac
aatctgatgctgcagaggcttgactatgaggttttccagcgcaaagaactttgcaaacgg
cgagatgaacttgaacaacataagaaaagtcttctagaagtcattgctaatagaaagaaa
ttcttgtcaagtcttccctcacacctcaagtccttgaaaaaggcatccttgcccgtacag
aatcagttgggaatattgcagacaaagaaattaaagcaacaccaactagcagagctactt
ccacctcctctttatgtaatctactcccaattcttggcacaaaaggaagcatttggcgaa
aacatagaattggagatagtaggaagtgtcaaagatgcccaagcttttgcacgccatcaa
gcaaataaggaaactggtgcatcgaccaataccgagagcaacaagttggaggatgatgcc
cttgacgaagatgatgatggccaaaggaggagaaaacggccaaagaagattcccgctaag
gtggacattgagcatgcagggatatatcaagttcatcccttaaagatcatccttcatata
tatggcaatgaaacatgtgaacccaagtcaatgaaattgctttctctgaagtttgagtgg
ttgttaaaattgaacgttatttgtgttgggattgaaggatctcatgaaggtcctgagaat
aacatcttatgcaacttgttccctgatgatactggccttgagctgcctcaccagtcagcc
aagcttgttgttggtgaaactattgcatttagtgataagagaacctctcgaccatataag
tgggcccaacatttggctgggattgactttttgccagaattgccaccgttggtgagtgca
caagaatctgctggtggtgaaactgttagaaatgatattgtatcaggcctctcaatgtat
cgtcagcaaaaccgaatacagacagttgtgcaaagattacgctctcggaaaaaggctcag
ctggctcttgtggaacagcttgattcactagaaaaactcaaatggccagttctgacatgt
gatgatgtcccatgggttttgcataaacctttatgctgtctgcaagattggtcgctcgta
ggttactccacaaggcaggcatcatctctgactacaatggagaaagagaaagttcaggat
ccagtagatgttgatatggttggaaaatctggcatttcaagagaggagattgacggtgct
agggaagatggggaacttcctgcgctagtttcatctacatctatcttaaataatgctcaa
gttactcccttaaaaacatccaatcttgagcattccaaacagttgactctaatttccaaa
agcattacacctcaaaccaattactctagggtgctaagtttcaataaacatgatgaagat
tatgagttgatgctagatgttgacagcgaccaggatgagccagtgcaaactgagcttgca
gcagatgatttggcgtctgttccttccaacgacataacaacaaagacatggatggattac
gggtccaaggaatattgccttgttattaccaggaacactgagccacctgccaaaaatctt
aaattgcaagcgaagattaaaatcagcatggagtaccctcttaggcctcctgtcttcact
ttgaacctctacacgatgaattctgaagaaaactctcctgactctgattggtataatgaa
cttcgggccatggaagctgaggtgaatctccatatacttaagatgctgcctttggatcaa
gagaactacatattgtctcatcaaatttgttgtcttgctatgttgtttaactactgcatt
ggcgaggaatccctgttctctgaaaggagaaagagcagttctgtcattgatgttggatta
tgcaaacctgttagtggtagtttacatgccagatcatttagaggaagggatcgtaggaag
atgatatcctggaaagatattgaatgcaccccgggctatccatgctaa
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