Benincasa hispida (wax gourd): 120085455
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Entry
120085455 CDS
T07258
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120085455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120085455
03036 Chromosome and associated proteins [BR:
bhj03036
]
120085455
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120085455
Coactivators
SAGA/TFTC/STAGA complex
120085455
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120085455
STAGA complex
120085455
TFTC complex
120085455
SAGA complex
120085455
SLIK complex
120085455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
LisH
WD40_like
PALB2_WD40
KNTC1_N
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
120085455
NCBI-ProteinID:
XP_038897348
LinkDB
All DBs
Position
9:complement(77688521..77699496)
Genome browser
AA seq
674 aa
AA seq
DB search
MDEEQIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSSSSSIDIDFAKHLLAFSEVEN
IPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFRE
DHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYEMLLQYLHKTQTTVI
LGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVQWGLLEDSLEERLEK
AAGLLSDSEKAEGEIKDGDVDENKKRSTEGGKQGASIKKVKKDKTAGATGKPLRAEANSA
SMAPRVKPELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTRNGLNCSSISH
DGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRSYTLFQGHS
GPVHAATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASC
SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQNGECVR
IFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEG
SLLASGSADCTVKLWDVTSSTKPPRTDENKSGTANRLRSLKTLPTKSTPVYSLRFSRRNL
LFAAGALSKSASTA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaacagatagcgaattttgtgtcagcgtacttgaagaagaagggtttcaag
gaaacggaacaagcttttcaggaagagctacgtcagaacaagactaattcctcctcttcg
tcttcttccattgacatcgacttcgctaagcacttacttgccttttccgaagtagagaat
attccagccagatacctcgaaggatatagcaagcttaggtcctgggcttacaactcccta
gatttgtacaagcatgagttgcttcgtgtgctttatcctgtgtttatccattgtttcatg
gatcttgtggctaaaggacatattcaagaagctcgaacctttttcaataggttccgtgaa
gaccatgaaatgatgcacctacgagatctacaaaaattagaaggtgtactatctccctct
catttggaggagatggaatttgctcattctcttaggcagagcaaagtcaacataaaaata
tgccagtactcctatgagatgctacttcaatatcttcataagacccaaaccacagtgata
cttgggattatcaatgaacgcatcaacttccaagttttccctggtcaacctagctcaata
tctgacgatgctgaacttgtgacactcacgggaagcacccaggacactgccaatcagata
aataaaaaagaagttcaatgggggttacttgaagattccttagaagaacgcttggagaaa
gctgctggtttgctttcagattctgaaaaggctgagggagaaatcaaggatggtgatgta
gatgagaataagaaaagaagtactgagggaggaaagcaaggtgcttcaattaaaaaggtc
aagaaggacaagactgccggtgcaactgggaaacctctgagggctgaagctaattctgca
tctatggcaccacgagtgaagcccgagcttgctttacccataatttcaacagaggtggaa
caatctattctcgaagacttgaggaaccgcgtgcagttgagttctgtagctctgccatca
gtcagcttttataccttcattaatacacgcaacggtttgaactgttcatcaatatcacat
gatggagctttagttgccggtggattttcagactcctctttgaaggtatgggacatggca
aagctgggacaacaagctggcaatactgttttacaggatgaaaatgatatgtctactagt
gatccagtgacagggcatacaagtgggaagaggtcttatacattatttcaaggtcattct
gggcctgttcacgctgccactttcagtcccatcggggactttgttctttcatcctctgct
gacacaactattcgattatggagcacaaaactaaatgccaatctagtttgctacaaaggc
cacaattacccagtatgggatgttcagtttagtccagttggacattattttgctagttgc
tcacacgatcgaactgcaaggatctggtctatggacagaattcaaccgttaaggatcatg
gcaggacatctatctgatgtggattgtgttcaatggcatgccaactgcaactacatcgca
actggttcgagtgacaaaactgttagattgtgggatgtccagaatggggaatgtgttcga
attttcattggtcacaggagcatgattctgtcgttggcaatgtcacctgatggtcggttt
atggcatctggtgatgaagacggtacaattatgatgtgggacctatcaacgggtcgttgt
gttacacctttgattgggcacacatcatgtgtttggactcttgctttcagttgtgagggc
tctctccttgcctctggctctgccgattgcacagtgaagttatgggacgtaacttcgagc
acgaaaccaccgagaacagatgaaaacaaaagtggaactgccaatagacttagatctttg
aagactctaccaaccaagtcgactccagtttacagtttgcggttctctcggaggaatctc
ttatttgcagctggggctctctcaaaaagtgcatcaactgcttaa
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