Benincasa hispida (wax gourd): 120085455
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Entry
120085455 CDS
T07258
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120085455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120085455
03036 Chromosome and associated proteins [BR:
bhj03036
]
120085455
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120085455
Coactivators
SAGA/TFTC/STAGA complex
120085455
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120085455
STAGA complex
120085455
TFTC complex
120085455
SAGA complex
120085455
SLIK complex
120085455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
DSE1_N
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
CFAP251_N
Beta-prop_IFT140_1st
ASA1
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_EIPR1
Beta-prop_DCAF4
PAC11
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Tricorn_2nd
LisH
Dimer_MINDY4_N
LisH_SSDP
PALB2_WD40
SHKBP1_KCTD3_C
Beta-prop_ACSF4
LisH_PAC1
Endonuc-BglII
Motif
Other DBs
NCBI-GeneID:
120085455
NCBI-ProteinID:
XP_038897348
LinkDB
All DBs
Position
9
Genome browser
AA seq
674 aa
AA seq
DB search
MDEEQIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSSSSSIDIDFAKHLLAFSEVEN
IPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFRE
DHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYEMLLQYLHKTQTTVI
LGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVQWGLLEDSLEERLEK
AAGLLSDSEKAEGEIKDGDVDENKKRSTEGGKQGASIKKVKKDKTAGATGKPLRAEANSA
SMAPRVKPELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTRNGLNCSSISH
DGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRSYTLFQGHS
GPVHAATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASC
SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQNGECVR
IFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEG
SLLASGSADCTVKLWDVTSSTKPPRTDENKSGTANRLRSLKTLPTKSTPVYSLRFSRRNL
LFAAGALSKSASTA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaacagatagcgaattttgtgtcagcgtacttgaagaagaagggtttcaag
gaaacggaacaagcttttcaggaagagctacgtcagaacaagactaattcctcctcttcg
tcttcttccattgacatcgacttcgctaagcacttacttgccttttccgaagtagagaat
attccagccagatacctcgaaggatatagcaagcttaggtcctgggcttacaactcccta
gatttgtacaagcatgagttgcttcgtgtgctttatcctgtgtttatccattgtttcatg
gatcttgtggctaaaggacatattcaagaagctcgaacctttttcaataggttccgtgaa
gaccatgaaatgatgcacctacgagatctacaaaaattagaaggtgtactatctccctct
catttggaggagatggaatttgctcattctcttaggcagagcaaagtcaacataaaaata
tgccagtactcctatgagatgctacttcaatatcttcataagacccaaaccacagtgata
cttgggattatcaatgaacgcatcaacttccaagttttccctggtcaacctagctcaata
tctgacgatgctgaacttgtgacactcacgggaagcacccaggacactgccaatcagata
aataaaaaagaagttcaatgggggttacttgaagattccttagaagaacgcttggagaaa
gctgctggtttgctttcagattctgaaaaggctgagggagaaatcaaggatggtgatgta
gatgagaataagaaaagaagtactgagggaggaaagcaaggtgcttcaattaaaaaggtc
aagaaggacaagactgccggtgcaactgggaaacctctgagggctgaagctaattctgca
tctatggcaccacgagtgaagcccgagcttgctttacccataatttcaacagaggtggaa
caatctattctcgaagacttgaggaaccgcgtgcagttgagttctgtagctctgccatca
gtcagcttttataccttcattaatacacgcaacggtttgaactgttcatcaatatcacat
gatggagctttagttgccggtggattttcagactcctctttgaaggtatgggacatggca
aagctgggacaacaagctggcaatactgttttacaggatgaaaatgatatgtctactagt
gatccagtgacagggcatacaagtgggaagaggtcttatacattatttcaaggtcattct
gggcctgttcacgctgccactttcagtcccatcggggactttgttctttcatcctctgct
gacacaactattcgattatggagcacaaaactaaatgccaatctagtttgctacaaaggc
cacaattacccagtatgggatgttcagtttagtccagttggacattattttgctagttgc
tcacacgatcgaactgcaaggatctggtctatggacagaattcaaccgttaaggatcatg
gcaggacatctatctgatgtggattgtgttcaatggcatgccaactgcaactacatcgca
actggttcgagtgacaaaactgttagattgtgggatgtccagaatggggaatgtgttcga
attttcattggtcacaggagcatgattctgtcgttggcaatgtcacctgatggtcggttt
atggcatctggtgatgaagacggtacaattatgatgtgggacctatcaacgggtcgttgt
gttacacctttgattgggcacacatcatgtgtttggactcttgctttcagttgtgagggc
tctctccttgcctctggctctgccgattgcacagtgaagttatgggacgtaacttcgagc
acgaaaccaccgagaacagatgaaaacaaaagtggaactgccaatagacttagatctttg
aagactctaccaaccaagtcgactccagtttacagtttgcggttctctcggaggaatctc
ttatttgcagctggggctctctcaaaaagtgcatcaactgcttaa
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