Benincasa hispida (wax gourd): 120085480
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Entry
120085480 CDS
T07258
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120085480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhj03041
]
120085480
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120085480
Spliceosome [BR:
bhj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120085480
Complex C
U5 SnRNP specific factors
120085480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
Motif
Other DBs
NCBI-GeneID:
120085480
NCBI-ProteinID:
XP_038897386
LinkDB
All DBs
Position
9:56067801..56082440
Genome browser
AA seq
2146 aa
AA seq
DB search
MAYLSGGAEAYDRLKNHDYRAASLVLASDSRRSDTHEPTGEPESLWRNIDAKNFGDRVCR
GTPLHKRKMKVGHYAHWPGKRRRTVLTSTEDEGVYMPKTKQTRAAYEAMLGLIQQQLGGQ
PLSIVTAAADETLAVLKDETFKNPNKKEEIEKLLNPIPNHVFHQLVSIGRLITDYSDGID
TAGPASANGDGTLDDGIGFTVEFEENEEEEESDLDMVQEDEEDEDDVAEHNGSGAVQMDG
GIDDDDLQENDDDGGMDLNVQDIDAYWLQRKISQAYEQQIDPQKCQNLAEEVLKILAEGD
DREIETKLLVHLQFEKFSLIKFLIRNRLKVVWCIRLARSEDQEERKKIEEKMMHLGPGLV
AILEQLHSTRATAKERQMNLEKSIREEARQLKPVERDIDNRGLTVKTQLLALDSIAFQQA
SHLMGNNKCVLPDGSYRHLSKGYKEIYVPKLTPKPFDSEEKFVKIASMPDWAQLAFKGMT
QLNRVQSKVYETALFKADNVLLCAPTGAGKTNVAVLTILQQIALHTNPDGSYNHNENKIV
YIAPMKALVAEIVGILSDRLQDYGVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIVTRK
SGDRTYMQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIEMTQEHIRLVGLSATLPNYE
DVAFFLRVDPKKGMFYFDNSYRPVPLSQVYNIGLTVKKPLQRFQLMNDLCYQKVTKVAGK
HQVLIFVHSRKETSKTAHAIRDSALANDTLGAFKHDSASREIFHTHTDLVKSNDLKDLLP
YGFAVHHSGMTRVDRQLVEELFRDGHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG
AWTELSPLDVMQMLGRAGRPQFDSSGEGIIITGHGELRYYLSLMNQQLPIESQFVSKLAD
QLNAEIVLGTVQNAREACNWLGYTYLYVRMLRNPTLYGLAPDALTRDITLEGRRADLIHS
AATILDKNNLVKYDRKSGYFQVTDLGRVASYYYITHGTISTYNEHLKPMMGDIELCRLFA
LSEEFKYVAVRQDEKVELAKLLECVPIPIKESLEEPSAKINVLLQAYISQLKLEALSLTS
DMVFITQSAGWLMRALFEIVLKRGWAQLAVKALNLCKMVSKRMWGVQTPLRQFYGIPNDI
LMKLEKKDLAWEQYYDLSSQELGELVRAPXMGRTLHKFIHQFPKLNLAAHVQPITRTVLR
VKLTITPDFQWEDKVHGYVESFWVLVEDNDGEFIHHYEYFLLKKQYIDEDHTLNFTVPIC
ELLPPQYFIRVVSDRWLGSQTILPLSFKHLILPEKFLPPTELLDLQPLPVTALRNPSYEA
LYQDFKHFNPVQTXAFTVLYNTDENVLVAAPTGSGKTICVEFAMLRNHQKGQDNIFCAVY
IASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEKGQIIISTAEKWDALSRR
WKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQIENKIRILAFSTSLANVK
DIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQAMTKPTYTAIVQHAKNGK
PALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEPFVDKIHDEMLKXLLRHG
VGYLHEGLCSLDQEVVTQLFQAGWIQVCVISSSMCWGVQLLAHLVVVMGTQYYHGRENAQ
SDYPVTDLMQMMGHASRPLLDKSGKCVILCHAPCKEYYKKFLYEPLPVESHLHHFLHDNI
NAEIVAGTIENKQDAVDYIRWTLMYRRLTQNPNYYNLQGVSHQHLSDHLSELVENTLSDL
EASKCIVIEDDVDLSPSNNGMIASYYVSYTTIERFSLSLTAKTKMKCLLEILASASEYAL
LPIRPGEEELIRRLINHQRFSFENLKCTDPHIKANALLQAHFLRQSVGGNLALDQREXVI
SASKLLQAMVDVISSNGWLSLALLAMEVSQMVIQGLWEQDSMLLQLPHFTKELAKRFQEN
PGKNIETVFDLMEMEDEERRELLQMSDSQLLDIACFCNRFPNIDVAYEVLDGENVAAGEN
IALQVTLERDLDGRTEVGPVDASRYPKAKEEGWWLVVGDTKSNQLLAIKMVSLQRKLKVK
LDFTAPQDTGKKPYTLYFMCDSYLGCDQEYNFMVDVKDAGPFDEEE
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atggcttatttgagtggcggtgctgaggcttatgatcgtctcaagaaccatgattatcga
gccgccagtttggtcctggccagtgactcccgccgaagcgatacacatgaacccaccggc
gagccggagtcgctttggagaaatattgacgctaaaaactttggtgatagggtttgtaga
gggacgcccttgcacaagagaaagatgaaagtaggtcactatgcgcattggccaggcaag
cgccgtcgtaccgttcttacttctacggaagacgaaggtgtttacatgcccaagactaag
cagaccagggcggcttacgaggcgatgctcggtctcattcaacaacaattgggcggccaa
cccttgagcattgtaacggccgcggccgatgagactttggcggttcttaaagacgagacg
ttcaagaaccctaacaagaaagaagagatcgagaaattattgaaccctattccaaaccac
gtgttccatcagttggtatccattgggaggcttattactgattattcagatgggatcgat
actgccggacctgcgtcagctaatggagatggtactcttgacgacggtataggtttcact
gttgaatttgaggagaacgaggaggaggaagagagcgatctcgacatggtccaggaggat
gaagaagacgaggatgatgtggcagagcataacggttctggcgccgtgcagatggacggt
ggaatcgatgacgatgacttgcaggaaaatgatgatgatgggggtatggaccttaatgtt
caggatattgatgcttactggctgcagaggaaaatctctcaggcttacgagcaacaaatt
gatccacagaaatgccagaatcttgcggaagaggtactgaagatactggctgaaggtgat
gatcgggaaattgaaaccaagttgttggtgcacctccagtttgaaaaattcagccttata
aaatttcttatacgaaaccggttgaaggttgtatggtgcatccgtttggctaggtctgaa
gaccaagaagagaggaaaaaaattgaggagaaaatgatgcatctgggtccaggtttagtt
gcaatcctcgagcagctgcattctactagagcaacagcgaaagagcggcaaatgaattta
gagaagagcatcagagaagaggctcgtcaattgaagcccgttgagagagatatagacaac
cgggggttgactgtaaagacccaattgcttgctcttgacagtattgcatttcaacaagct
agtcatttgatgggaaacaacaaatgtgtacttcctgatggatcatacagacatctcagt
aagggttacaaagagatttatgtacctaaactgactccaaagccttttgatagcgaagag
aaatttgttaaaattgcttccatgccagattgggcacaactagcttttaagggaatgact
cagttaaatagggtgcagagtaaagtctacgagactgccctctttaaagccgataatgtt
ctcttgtgcgcccccactggtgccgggaaaaccaatgtcgcagtccttaccatactacag
cagattgcgctgcacacaaatccagatggttcgtacaaccacaatgaaaataagattgta
tatattgcacctatgaaagcccttgttgctgaaattgttggcattctgtctgatcgcttg
caggactatggtgtcaaagtacgggaacttagtggagatcagacattgactcgtcaacag
attgaggagactcaaataattgttacaactcctgagaagtgggatattgttactaggaag
tccggtgatcgcacatacatgcagcttgtaaagcttttgattattgatgagattcatctt
cttcatgataacagaggtcctgtgcttgaaagcattgtcgccagaacagtgaggcagatt
gagatgactcaggagcatattcgcttggtgggattatcagccacactccctaactatgaa
gatgtagcattctttttgcgagttgatccaaaaaaaggtatgttttattttgacaatagc
tatagacctgtcccgctctctcaagtgtataatattggattaactgtgaagaagccattg
cagaggttccagttgatgaacgatctctgttatcagaaggtaacgaaggttgcaggaaaa
catcaggttcttatatttgtccattcaaggaaagaaacatccaaaacagctcatgctata
cgagattctgctcttgccaatgatacacttggtgcattcaagcacgacagtgctagccgt
gagatttttcacactcatacagatttagttaaaagtaatgatctcaaagatcttcttccc
tatggttttgcagttcatcattctgggatgacaagggttgatcgccaacttgttgaggaa
ctttttcgtgatggtcatattcaagttttggtttcaacagctactcttgcttggggtgtg
aacctgccagctcatactgtgattatcaagggaacccagatttacaatccagagaaagga
gcatggactgagttaagtccactagatgttatgcagatgctgggtcgtgcaggaagacct
caatttgattctagtggggagggaataatcatcacagggcacggtgaattacggtactat
ctttcactaatgaaccaacagctaccaattgaaagtcagtttgtgtccaaattggctgat
caattaaatgcagaaattgttcttgggactgttcaaaatgcaagagaagcgtgtaattgg
cttggatatacttacttgtatgttcgtatgctaaggaatcccaccctttatggactagca
cctgatgctcttacaagggatataactttggaaggcaggagagctgatttgattcattca
gctgctacaattttagataaaaataatctggtgaagtatgatcgaaaaagtgggtatttt
caagttacggatttgggtcgtgttgctagctactactatataacacatggaacaatatct
acttacaatgagcatttgaagccgatgatgggagatattgaactatgtcgtttgtttgca
ttgagtgaagaatttaaatatgtagcggtgcggcaagacgagaaagtggaattagcgaag
ttgttggaatgtgttccaattcctatcaaggaaagcttggaggaacccagtgccaagatc
aatgttttgctgcaagcgtatatatctcagttaaagctggaagcgctgtcattgacatct
gacatggtgttcataactcagagtgctggatggcttatgcgggctctttttgagattgtt
ttgaaacgaggatgggcacaacttgctgtgaaggccttgaacttgtgtaagatggtgagt
aaaaggatgtggggtgtccagacacctcttcggcaattttatggtatcccaaatgatatt
ctcatgaagctggagaagaaggatttggcttgggaacagtattacgatctctcttcgcaa
gaactaggtgagcttgtacgtgccccataaatgggaagaactcttcataagttcatccat
caattcccaaaattaaatcttgctgcacatgttcagccaattacacgcactgttctgaga
gttaaactcacaataacaccagacttccaatgggaggacaaggttcatggatatgtagag
tcattttgggtgcttgtggaggataatgatggtgaattcattcatcattacgaatatttc
ttgttgaagaagcagtatattgatgaggaccacaccttgaatttcacggtgccaatatgt
gaactgctacccccgcagtacttcatacgtgttgtgtcagatagatggctaggatcacaa
actattttgcccctctcttttaagcacctcattctgccagaaaagttcctccctccaacg
gagctgttagacttacaacctcttcccgtgactgcgttgagaaatccatcttatgaagct
ctttatcaagatttcaagcatttcaatcctgttcagacttgagcctttactgtgctatat
aacaccgatgaaaatgttttagttgcggcaccaactggaagtggaaaaactatctgtgtg
gagtttgctatgttacggaatcatcagaaaggacaggataacatattttgtgctgtctat
attgcctcgatagaagctcttgccaaagaaagtttcagggactgggataagaagtttgga
aagggacttgggatccatgttgttgagttaacaggggaaacaattacagatttgaaactt
cttgagaaaggtcaaataatcattagtaccgcagagaaatgggatgctctatctcgtcgt
tggaagcagcacaaacatgttcaacaggtcagtctttttattattgatgagcttcacttg
attggaggtcaaggtggttctgtattggaggtgattgtgtctaggatgagatatattgca
agtcagattgagaacaagattcgaattctggcgttttctacttctcttgcaaatgtaaaa
gatatcggggattggataggtgctacttcgcatggtctcttcaattttgcacctggtgtt
cgtcctgtgcctttggaaattcatattcaggtggtggatattgctaattttgaatctaga
atgcaggcaatgacaaagccaacatacaccgccattgttcagcatgcaaagaatggaaag
ccagcacttgtctttgttcccacaagaaagcatgtcagactggcagcagtagatataatg
acatactcaagagcagacaatggagagaaactgccatttttgctaagatctcttgaagac
attgaaccctttgttgacaagattcatgatgagatgctaaagncccttttacgtcatgga
gttggctatttacacgagggattgtgtagcttggatcaagaagttgtgacacaactgttc
caagcagggtggattcaagtttgtgtcataagcagttcgatgtgttggggtgttcaattg
ttagcccatttggtggtggttatgggaacacaatattatcatggaagggaaaatgctcag
tctgactaccctgttactgatttgatgcagatgatgggccatgccagtcgaccactgctc
gataaatctgggaaatgtgtcattctctgtcatgcaccttgtaaagaatactacaagaag
ttcttatatgaacctctcccagttgaaagccacctacaccatttcctccatgataatata
aatgcagaaattgttgctggaactattgagaacaagcaagatgctgttgattatattagg
tggactcttatgtacaggaggttaactcaaaatcccaattattataatcttcaaggcgtc
agtcatcagcatctttctgaccacctttcagagcttgttgaaaacacgctgagtgactta
gaagcaagcaagtgcattgtcattgaggatgatgtggacctttctccatctaataatgga
atgatagcatcatattatgtcagttatactactattgagcgtttcagtttgtcattaact
gctaaaaccaagatgaagtgtcttctggagattctggcttcagcttctgaatatgcattg
cttccaatacgcccgggtgaagaagagttgattcgtagattaattaatcatcaacgattt
tcctttgaaaatctgaaatgtacagacccacatatcaaagcaaatgctttgctgcaggca
catttcttgaggcaatctgttggtggtaacttagcattggatcaacgagagngagtcatt
tcagccagtaagttgctgcaggcaatggtggatgtcatttcgagcaatggttggctgagc
cttgcccttcttgctatggaagtcagccagatggtaatccagggcttgtgggagcaggat
tccatgcttcttcagctaccacatttcacaaaggagctggccaagagatttcaagagaac
cctggaaagaacatagagacggtatttgatctgatggaaatggaggacgaggaaaggcgt
gaactacttcagatgtcagattctcagttgttggatattgcatgtttttgcaatcgattt
ccaaatattgatgtggcatatgaggtacttgatggtgagaatgttgcagctggggagaac
atagcactgcaagttacactagagcgtgatcttgatgggaggactgaggttgggcctgtg
gatgcttcgaggtaccccaaagccaaagaagaaggctggtggcttgttgttggcgacaca
aagagtaaccagctactggcgattaagatggtttctcttcaaaggaagttgaaggtcaag
cttgatttcactgcacctcaagatactggaaagaaaccatacacgctttatttcatgtgc
gactcatacttgggttgcgatcaggaatataatttcatggtggatgtcaaagatgcaggt
ccatttgatgaagaagagtag
DBGET
integrated database retrieval system
