Benincasa hispida (wax gourd): 120085620
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Entry
120085620 CDS
T07258
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120085620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120085620
03036 Chromosome and associated proteins [BR:
bhj03036
]
120085620
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120085620
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120085620
PBAF complex
120085620
GBAF(ncBAF) complex
120085620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
IBB
Motif
Other DBs
NCBI-GeneID:
120085620
NCBI-ProteinID:
XP_038897629
LinkDB
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Position
9:72487120..72493757
Genome browser
AA seq
805 aa
AA seq
DB search
MPPSPSFPSGSRGKWRKKKRDSQIGRRNNYNSNGTNRHDDDDEDEDLVAAENEEMERDNN
DDSEDPQISLHPAPNSAIQETELLSDDKVRVSEFPQVVKRAVTRPHSSVMAVVAMERTNQ
YGESKGMPGNSLILENVSYGQLQALSAMPADSPALLDQERAEAGNAAYVVTPPPIMEGRG
VVKTFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYM
ENPEKRVTVSDCQGLVDGVSNDDLTRIVRFLDHWGIINYCAPTPSCEAWNSSSYLREDMN
GEIHVPSAALKPIDSLVKFDKPKCRLKAADVYSALPCHDDIDGLSDLDNRIRERLAENHC
SSCSLSVPIAYYQSQKEVDVLLCSDCFHEGKYVAGHSSIDFLRVDMAKDYELDSENWTDQ
ETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSS
HGEDKEKSRSNMNGNMAGSSSQDNKEIHDRLPFANSGNPVMALVAFLASAIGPRVAASCA
HASLAALSEDSVASSGSIFQMEGSVNANRTNVDVKQIRDGGSHGELPNSDKKDENKAETE
ATVLSSERVKDAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEV
ETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTPPVSLPGVIPSMVVNNSNTNSRPN
MISPPASQPSVSGYSNNQPLHPHMSYMPRQPMFGLGQRLPLSAIQQQPPPPSTSSNAMFN
GPSNAQPSLSHPMMRPVTGSSSGLG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgccaccttccccttccttcccatctgggtctcgtggaaaatggcggaaaaagaagagg
gattcgcaaattggccgcagaaacaactataatagcaacggtaccaacagacatgatgac
gacgatgaagatgaagaccttgttgctgctgaaaatgaggaaatggaacgcgataacaac
gatgattctgaggaccctcagattagtcttcaccccgcgccaaattccgccattcaggag
actgaacttctgtcggatgataaagtgcgagtctctgagtttcctcaggtcgttaagcgg
gctgtcactcggcctcactcttctgtgatggccgttgtggcaatggagaggacaaatcag
tacggagagagtaagggcatgcctggaaattccttgattttggagaatgtgtcttatggg
caactccaggcactgtctgctatgccggcggatagtccggctttgctggatcaggagagg
gcggaggctgggaatgctgcgtatgttgtaactccaccgccgattatggaagggcgtggc
gtggttaagacgtttgggagtagggtgcatgttgtccctatgcactcagattggttttca
cccgccacggtgcatcgacttgagagacaagttgttccacattttttctctgggaaattg
cctgaccgcactcctgaaaagtatatggagattcgaaattttgttgttgccaaatacatg
gagaatcctgagaaaagggtcacagtttcagactgccaagggttggttgatggtgtcagt
aatgatgatttaactcgaattgttcgatttcttgatcattggggtattattaattattgt
gctcctacacctagctgtgaagcatggaatagcagttcatacttgagagaagatatgaac
ggtgagattcatgtgccatcagctgctttgaagcctattgatagcttggtcaaatttgac
aaaccaaagtgtaggctcaaggcagctgatgtatattcggcacttccatgccacgatgac
attgatggtttgtctgatttggataacagaattcgagagcgtctagctgaaaatcattgt
agctcttgttctctgtctgttcccattgcgtactaccaatcacagaaggaggttgatgtt
ttgctttgctctgattgcttccatgaaggcaaatacgttgctggccattcaagcattgat
tttctgagggtggacatggcgaaagattatgaactagatagtgaaaattggaccgatcaa
gaaactctattgcttttagaggcaatagaattgtataatgagaattggaatgaaattact
gaacacgttgggtccaagtctaaagctcaatgcattatacattttcttcgtctatcagtg
gaggatggccttctagaaaatgttgatgtgcctggggtttctctctcgtcaaattcgtca
catggagaagataaggagaagtcacgttcaaatatgaacgggaacatggcaggatcctcc
tctcaagataataaagagatacatgataggctcccctttgccaattctgggaacccagtc
atggcgttggttgctttcctcgcatctgctattggaccaagagttgctgcatcttgtgct
catgcatccttagctgcattatctgaggacagtgtagcttcctccgggagcatctttcaa
atggaaggttctgtaaatgctaataggacgaatgtggacgtcaaacaaatcagagatggt
ggctcccatggagaacttccaaattcagataaaaaagatgagaacaaggcagagacagaa
gcaacagtattatcttctgaaagagttaaagatgcagcaaaagcaggccttgctgccgct
gcaacaaaggcaaaattgtttgctgatcatgaagaacgagaaatccaacgattatctgct
aatattataaatcatcagttaaaaagactggagctgaagctgaagcagtttgcagaagta
gaaaccttcttgatgaaggaatgcgaacaagttgagaggacaaggcagaggtttgtcgca
gagcgagcaagaatgttaggtgtccaatttggacctgctggagttacgccacctgtgagt
ttaccaggcgttatcccttcgatggtagtaaacaacagtaacacaaacagtaggccgaat
atgatctcacctccagcttcacagccgagcgtttcggggtatagcaacaaccaaccactt
cacccccacatgtcatacatgccccgacaaccaatgtttggtttgggacaaaggctaccc
ttatcggcaattcagcagcagccgccgccgccctcaacttcttctaatgccatgtttaat
ggtccaagcaatgcacaaccttctctcagtcacccaatgatgaggccagttactggatcc
agctctggattaggctga
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