Benincasa hispida (wax gourd): 120086018
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Entry
120086018 CDS
T07258
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03022
Basal transcription factors
bhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120086018
09124 Replication and repair
03420 Nucleotide excision repair
120086018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120086018
03036 Chromosome and associated proteins [BR:
bhj03036
]
120086018
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120086018
Enzymes [BR:
bhj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120086018
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120086018
Chromosome and associated proteins [BR:
bhj03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120086018
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120086018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
AAA_11
NAMPT_N
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120086018
NCBI-ProteinID:
XP_038898338
LinkDB
All DBs
Position
9:complement(24003570..24018552)
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQLEDVTVYFPYDQIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK
VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
NVCIEALSVSVRRQTIEGARRNLNKMRQEIDRFKETDAGRLRAEYNRLVEGLAQRGNLPI
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS
IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGSSGKKTLLSQEDLEKMSEANMNEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaattggaggatgtcacagtctacttcccttacgatcaaatttaccccgag
caatacgcttacatgctcgagctgaagcgagctctcgacgccaagggccattgtcttctc
gaaatgcccacaggcactggaaaaaccatcgcccttctttccctcatcaccagctacgcc
ctctccaaaccccaaaaccctgtcaagctcatctactgcactcgcactgtccacgaaatg
gagaagaccctcgccgagcttagattgcttcatgattaccaggttcagcagcttggccct
cgcgctcagatcttggctgtggggctttcgtccaggaagaatctgtgtgtcaatccgaag
gttttggcgtcggagagtcgggattctgtcgacgctggttgccgcaagctgacggcgagt
tgggttagggctatggcggctgagaatcccaatgtgcctacttgtgagttctttgagcaa
tatgaaaaggcgggttccagtgcggtgttgccgccgggggtttatacgttgcaggacctg
agagctttcgggacaaagaagggttggtgtccttacttcttggcacggcatatggtacag
tttgcaaatgttgtagtatatagttatcaatacttgcttgatcccaaagtggctagcatt
atatccaaggaaatgcagcgagaatctgttgtagtgtttgatgaggcgcacaacatcgat
aatgtgtgtattgaagcccttagtgttagtgtgaggaggcagactattgaaggtgccaga
agaaatctcaataagatgcggcaggagattgataggttcaaggaaactgatgcaggtaga
ctgcgtgcagaatataacaggctggtggagggtttggcacaaagaggaaacctacctatt
tcggacacgtggctttcaaaccctgcccttccagatgatattttgaaggaggccgtgcca
ggaaatatacgccgagctgaacactttatacatgtgttgcggagattggttcagtatctt
gaaggacgtttggacactgaaaatgttgagaaggaagggcttgtgacttttgttggctct
attggttcacaggctggaattgaccaaaaaaccttgaagttttgttatgatcgtctccac
tccctcatgctgacacttgaaattactgacacagatgagtttttgcacatacagaccata
tgtgactttgcaacactcattggaacatatgcacgaggtttctcaattataattgagcct
gttgatgagagaatgccccatattcctgaccctgtactgcagcttagctgtcatgatgcc
tcacttgctattaagcctgtgtttgaacgatttcaatcagttgtgattacatctggtact
ctgagcccaattgatctctaccctcgtttgctcaattttaatcctgttgttagcagaagt
tttacaatgtccttgaccagagattgcatatgcccaatggttctcactcgtggcagtgat
cagcttccagtaagtactaaatttgatatgagaagcgatcttggtgtagtaaggaattat
ggcaggctcttgcttgagatggtctcagcagttcctgatgggatagtatgtttcttcgtc
agttactcgtatatggatggcattgtaaatagttggaatgaaactggcatactaaaggaa
ataatgcagcacaaacttgtgttcattgagacccaagatgtcgtggagactacgctggct
cttgacaattaccgcaaggcttgtgactgtgggagaggtgctgtgtttttttccgtagcc
aggggaaaagttgctgaaggtatagattttgatcgacattatggacggttggtgataatg
ttcggtgttccttttcagtacacattaagcaaaatcttgcttgctcggctggagtattta
cgtgagacatttcaaataaaggaaggggattttttaacttttgatgcattgagacaagct
gcacaatgtgttggtcgagttatccgatcgaaggctgactacgggatgatgatatttgcc
gataaaaggtatagccgtcatgacaagcgctcgaaattgcctggatggatattgtcacat
ttacgtgatgcacacttgaatttgagcacagacatggctctgcacatagctcgggagttc
cttaggaagatggcacaaccctatgataaggcagggagcagcggtaaaaagaccttgttg
tcccaagaagacttagaaaagatgtctgaagccaacatgaatgagatgttgtattaa
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