Benincasa hispida (wax gourd): 120086273
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Entry
120086273 CDS
T07258
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120086273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhj03032
]
120086273
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120086273
DNA replication proteins [BR:
bhj03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120086273
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120086273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
ECT2_BRCT0
TopBP1_BRCT0
DUF630
Ribosomal_L1
Motif
Other DBs
NCBI-GeneID:
120086273
NCBI-ProteinID:
XP_038898754
LinkDB
All DBs
Position
9:complement(72683816..72707377)
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AA seq
972 aa
AA seq
DB search
MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSPDH
EKFEDLRAKGCNLLGPQCVMSCAKEHRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGK
LVNAMGGVLHMKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQE
GYRVLPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCTHLICDAPEGDKYKVA
RTWGRINIVTRKWFDQSIARKACLNEELYPVGSVSGTSNKMTRGCLTAHNSQEKITGNLQ
AVPSSFIADSNFSAVSGPGFSDMDFEATLSQSTSMFSDASHFINEVDVEVPVVMGKNEEN
TDNCIANDFQSENDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVG
NPSEMEKKEVRDIAASGVIHVVRANWLEDCDRQKKEIPILGRHMAYDELIPKGLISSSKT
STIVMDPNKVPNVHPSVPSNVLEGNVHVRIGKTSTTEEKIEEKIETNVSGDRTMKLSQKS
HQCVANGTNKSQEKMWRDFMVPSGKSSCVFKGKIFCFSSSFPEDRRAEIVEWINQGGGEV
VEDHTKQKVHFTVECHGEIPRSTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCRV
PLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGMKYEAACK
WGIHSITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQTVQRIASESES
QFPIHSAIPRDQSTGTNSSSIGEVEQISFTKKRRKFLDEAIQKRSLFVGNSSTHFDCNLN
STKETTSKSSVVTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTDCDKSIFPPDCSGVGQDH
SEAPPIGGLSNQWSKRAERKEDVNNPTTGDGSVGIYDGFSETQTESQVVGYEEDLSGRQM
LIDRVRTRSSMT
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagccgaagccattcgccggagctaatgtgtttgtctcccgcaatcttgtcgct
ccggagatgttcgacgctcttcacgacgctctcaagcagaatggggctgaggttttcctt
tgttgcgatccctctcgaaacggccctaatgattatcatgttatctcctcccccgatcat
gaaaagttcgaggatcttcgtgcgaagggatgcaatttgctaggtcctcagtgcgtgatg
tcatgtgcaaaagagcacagaccccttcctcaacagggttttacttgctgccttgcaatg
gatggtgtgaaaattctagcatccggatttcaggaagatgaaaaggttgagatagggaag
ttagttaatgcaatgggaggagtattgcatatgaaagcatcactagatgtcagctttgtt
attgcgaagaatgcattggctgctaaatacaagtgggcactaaacatttcaaagaaacca
attgtgacatttgcttggttacaacaatgctggattgaacatcgtgtagtgcctcaggag
ggatatcgagtccttccattttctggattgaatatatcggtatctaggattcctgcaggt
gagcgcaaggagattgaaaagcttatcttgcaaaatggtggaagatattctgccgatctt
acaagaaagtgcacacatttgatatgtgatgctcctgaaggtgacaagtacaaggttgca
cggacatggggccgtatcaatattgttactcggaaatggtttgatcagtccatagctaga
aaagcatgtcttaatgaggagttgtaccctgttggtagcgtttctggaacttcgaataaa
atgacaaggggttgtttgactgctcacaatagccaagagaagattactgggaacttgcaa
gctgtaccatcctcatttattgctgattcaaatttctcagcagtttctggtcctgggttt
tcagatatggattttgaagctactctttcacagagcacatctatgttttcagatgcttct
cattttataaatgaggttgatgttgaagtgccagttgtgatgggaaagaacgaagaaaac
actgataattgtattgcaaatgactttcagtctgaaaacgacctatatttgtcagcatgt
agaataaaagttgttgggtttgaagcttctgagatgcggaagattgtgaatatgattctc
agaggtggaggctcccgatacatgttgttcaatgacaaattaacacacataatagttgga
aatccctcggaaatggagaaaaaggaggtcagagatattgcagcttcaggagtcattcat
gttgttagagccaactggcttgaagattgtgatcgtcagaagaaggagatccctattctt
ggtagacacatggcatatgatgaacttattcctaaaggtttgatatcatccagtaaaacg
agcaccatcgttatggatccaaataaagttccgaatgttcatccaagcgtgccatcaaat
gtgttagaaggaaatgttcatgttagaattggaaagacatcgacgacagaggaaaaaatt
gaagaaaaaattgaaacaaacgtgagtggtgacaggaccatgaaattatcccagaaaagc
caccaatgcgtagcaaatggtacaaacaagagtcaagaaaagatgtggcgtgatttcatg
gttccaagtgggaagtcatcatgtgtgtttaaggggaaaatattttgtttttctagttcc
tttccagaagatcggagggctgaaattgtagagtggataaatcaagggggaggggaggtt
gttgaagatcatacaaagcagaaagtgcacttcactgttgaatgtcatggtgagatacca
aggagtacagatgttcatactacttacgtgtcaagtcattgggtccgatcatgtttagag
gatggatgcttgtgggataccaatgggcacattctctattctcctcttccttgccgtgtc
cctttgtctgggtttgaaaacatacggttctgtgtttcacaatatgatgataaagacaga
gtactgttaagaaatctgtgttttgtacttggggccaagtttgtggagaagttgacaaag
aaggtaacacatctaatatgtaagttttccgatgggatgaagtatgaggctgcttgtaaa
tggggaatacattcaattacagctgaatggatatatgagtgtgtcagacagagtaagatt
gtttctcttgatttgtatcgcccaaaagaagttacagctcaagacagagcggcaggctta
tgcactgtcagtcagtttcctactcaaactgtccaaaggatagccagcgaaagtgaatcc
cagtttcctatccattctgctatcccgagagaccaatcaactggaactaacagtagctct
ataggagaagttgaacaaataagttttactaaaaaaaggcgcaagttccttgacgaagct
atacaaaagcgttcactttttgttggaaacagttccactcattttgactgcaatttgaac
tccacaaaagaaactacatcaaaatcttctgtggtaacttcacacgtccctgatgtcgct
gccgcaattgaggatttgttggagcagacaactaagattcacgatcagaagtcacctgga
aagactgactgcgacaaaagtattttcccgcccgactgttcgggcgttggtcaagaccat
tcagaagctcctccaattggtggtttatccaaccagtggtcaaaaagagctgaaagaaaa
gaagacgtcaacaatcctactactggagatgggagtgtaggcatatatgatggctttagt
gaaacacaaactgagtctcaggttgtgggttatgaagaggatttgtcaggaaggcaaatg
ctcatagacagagttcgaactcggagtagcatgacttga
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